miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 22971 0.67 0.95158
Target:  5'- cGCGCggcGGCGcGCCGAcgcCGACGCc -3'
miRNA:   3'- uCGCGaaaCUGC-CGGUUcuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 23084 0.67 0.966291
Target:  5'- uGGCGCUgcgcuCGGCCgAAGAgCG-CGCc -3'
miRNA:   3'- -UCGCGAaacu-GCCGG-UUCUaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 24168 0.69 0.916647
Target:  5'- uGGCGCUgccgcuGCGGCCg----CGGCGCg -3'
miRNA:   3'- -UCGCGAaac---UGCCGGuucuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 24692 0.68 0.94282
Target:  5'- aAGCGCcac--UGGaCCGAGAcCGACGCg -3'
miRNA:   3'- -UCGCGaaacuGCC-GGUUCUaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 26181 0.66 0.975021
Target:  5'- gGGCGCgucGACGGCgCuccaguugcGGAagGACGCc -3'
miRNA:   3'- -UCGCGaaaCUGCCG-Gu--------UCUagCUGCG- -5'
7901 5' -53 NC_001973.1 + 27857 0.71 0.838159
Target:  5'- cGGCGC--UGGCGGCCGcggccgcgGGcgCgGGCGCg -3'
miRNA:   3'- -UCGCGaaACUGCCGGU--------UCuaG-CUGCG- -5'
7901 5' -53 NC_001973.1 + 28285 0.85 0.206813
Target:  5'- cGCGCcucgUGGCGGCCGAGcgccgcGUCGGCGCa -3'
miRNA:   3'- uCGCGaa--ACUGCCGGUUC------UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 28418 0.72 0.78503
Target:  5'- gAGCGCgcUUGGCGGCCGcGGcCGcCGCc -3'
miRNA:   3'- -UCGCGa-AACUGCCGGUuCUaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 30396 0.69 0.898004
Target:  5'- cGGCGCggcggcGGCGGCgGAGG-CGcCGCg -3'
miRNA:   3'- -UCGCGaaa---CUGCCGgUUCUaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 31740 0.66 0.981975
Target:  5'- cAGCGCcggGugGGCCGugccgCGcGCGCu -3'
miRNA:   3'- -UCGCGaaaCugCCGGUucua-GC-UGCG- -5'
7901 5' -53 NC_001973.1 + 33153 0.67 0.95158
Target:  5'- aGGUGC-UUGugGuCCAAG-UCGGCGUu -3'
miRNA:   3'- -UCGCGaAACugCcGGUUCuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 34078 0.68 0.927854
Target:  5'- gAGCGCcaucUUGGCGGUgGcguagccgcagAGGUCGuCGCg -3'
miRNA:   3'- -UCGCGa---AACUGCCGgU-----------UCUAGCuGCG- -5'
7901 5' -53 NC_001973.1 + 34201 0.66 0.96941
Target:  5'- gAGCGCgUUGGacgucuUGGCCA-GGUCGugcagcucGCGCg -3'
miRNA:   3'- -UCGCGaAACU------GCCGGUuCUAGC--------UGCG- -5'
7901 5' -53 NC_001973.1 + 35155 0.66 0.975021
Target:  5'- -cCGC-UUGAUGGCgAcgcuGGcgCGACGCa -3'
miRNA:   3'- ucGCGaAACUGCCGgU----UCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 35689 0.73 0.716768
Target:  5'- cGGCGCggUGGCGGCgAuGcgCGACGa -3'
miRNA:   3'- -UCGCGaaACUGCCGgUuCuaGCUGCg -5'
7901 5' -53 NC_001973.1 + 36315 0.7 0.854411
Target:  5'- gGGCGCc---GCGGCCGAcgcGGcCGACGCg -3'
miRNA:   3'- -UCGCGaaacUGCCGGUU---CUaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 38476 0.67 0.955603
Target:  5'- gAGCGagaaacaGACGGaC-AGGUCGGCGCg -3'
miRNA:   3'- -UCGCgaaa---CUGCCgGuUCUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 39403 0.67 0.955603
Target:  5'- cGGCGCgcgccagGuCGGCCGcGGUgaGGCGCg -3'
miRNA:   3'- -UCGCGaaa----CuGCCGGUuCUAg-CUGCG- -5'
7901 5' -53 NC_001973.1 + 41963 0.69 0.916647
Target:  5'- cGCGUUUcgccUGACGGCCGacaAGAguuuGCGCg -3'
miRNA:   3'- uCGCGAA----ACUGCCGGU---UCUagc-UGCG- -5'
7901 5' -53 NC_001973.1 + 42029 0.66 0.975021
Target:  5'- gAGCGUc--GACcuGGCCGAGGUgaGCGCg -3'
miRNA:   3'- -UCGCGaaaCUG--CCGGUUCUAgcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.