miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 1369 0.66 0.981975
Target:  5'- cAGCGCgcguccGGCGcgcGCCAAacucuaGUCGACGCu -3'
miRNA:   3'- -UCGCGaaa---CUGC---CGGUUc-----UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 1826 0.7 0.87722
Target:  5'- gAGCGCgcacACGGCCAGGc-UGugGCa -3'
miRNA:   3'- -UCGCGaaacUGCCGGUUCuaGCugCG- -5'
7901 5' -53 NC_001973.1 + 2902 0.67 0.955603
Target:  5'- cGCGCUUUGcucGCCGcgcGAUCGuCGCg -3'
miRNA:   3'- uCGCGAAACugcCGGUu--CUAGCuGCG- -5'
7901 5' -53 NC_001973.1 + 4010 0.66 0.981975
Target:  5'- cGCGCUUgaACGcGCUGAGcgCG-CGCu -3'
miRNA:   3'- uCGCGAAacUGC-CGGUUCuaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 4331 0.69 0.903825
Target:  5'- cGCGCUcgacgaccucUcGGCGGCCGuGAUCGuauauccACGCg -3'
miRNA:   3'- uCGCGA----------AaCUGCCGGUuCUAGC-------UGCG- -5'
7901 5' -53 NC_001973.1 + 5947 0.71 0.821134
Target:  5'- uGCGCgac-GCGGCCGgcGGAUgCGACGUc -3'
miRNA:   3'- uCGCGaaacUGCCGGU--UCUA-GCUGCG- -5'
7901 5' -53 NC_001973.1 + 6108 0.68 0.94732
Target:  5'- uGCGCa-UGACGGCgcgCGAGggCGcCGCg -3'
miRNA:   3'- uCGCGaaACUGCCG---GUUCuaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 6183 0.67 0.962607
Target:  5'- uGUGCUUcaUGACGGUgGuGAUcaaccggCGGCGCg -3'
miRNA:   3'- uCGCGAA--ACUGCCGgUuCUA-------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 6385 0.77 0.500993
Target:  5'- cGCGCUucgagcaaacguuUUGAUGGCCGAGugcgcggcggCGGCGCg -3'
miRNA:   3'- uCGCGA-------------AACUGCCGGUUCua--------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 7928 0.66 0.972318
Target:  5'- gAGCGCgugUGcGCGGCCGg---CGugGUg -3'
miRNA:   3'- -UCGCGaa-AC-UGCCGGUucuaGCugCG- -5'
7901 5' -53 NC_001973.1 + 8190 0.67 0.959392
Target:  5'- gAGCGCgccGACGGCaccGcUUGGCGCc -3'
miRNA:   3'- -UCGCGaaaCUGCCGguuCuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 8595 0.7 0.88438
Target:  5'- cGCGCgagaaagccGGCGGCCGcgccgcGGA-CGACGCc -3'
miRNA:   3'- uCGCGaaa------CUGCCGGU------UCUaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 9123 0.68 0.94732
Target:  5'- uGCGCUcgcacACGGCgAuGAUCGACGa -3'
miRNA:   3'- uCGCGAaac--UGCCGgUuCUAGCUGCg -5'
7901 5' -53 NC_001973.1 + 11277 0.7 0.854411
Target:  5'- gAGCGCgcacACGGCCAAGc-UGugGCa -3'
miRNA:   3'- -UCGCGaaacUGCCGGUUCuaGCugCG- -5'
7901 5' -53 NC_001973.1 + 12204 0.66 0.968803
Target:  5'- cGCGUaggauuuuacgUGcCGGCCAGGGUCGAuCGa -3'
miRNA:   3'- uCGCGaa---------ACuGCCGGUUCUAGCU-GCg -5'
7901 5' -53 NC_001973.1 + 13434 0.73 0.754489
Target:  5'- aAGCGCaacaucgacGCGGCCAGcGUCGugGCg -3'
miRNA:   3'- -UCGCGaaac-----UGCCGGUUcUAGCugCG- -5'
7901 5' -53 NC_001973.1 + 16903 0.68 0.94282
Target:  5'- cGCGCcggcggcGGCGGCCucucggCGGCGCa -3'
miRNA:   3'- uCGCGaaa----CUGCCGGuucua-GCUGCG- -5'
7901 5' -53 NC_001973.1 + 16945 0.67 0.957904
Target:  5'- gGGCGUUUccgcgaaGCGGCCGugcccgaguuuuuGGUCGugGCg -3'
miRNA:   3'- -UCGCGAAac-----UGCCGGUu------------CUAGCugCG- -5'
7901 5' -53 NC_001973.1 + 21545 0.67 0.955603
Target:  5'- cGGCGUcg-GGCGcGCCGuGGUccCGGCGCg -3'
miRNA:   3'- -UCGCGaaaCUGC-CGGUuCUA--GCUGCG- -5'
7901 5' -53 NC_001973.1 + 22541 0.68 0.938076
Target:  5'- cGCGCgacaggUGACGGCgggCGAGuUCGAgUGCg -3'
miRNA:   3'- uCGCGaa----ACUGCCG---GUUCuAGCU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.