miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 28285 0.85 0.206813
Target:  5'- cGCGCcucgUGGCGGCCGAGcgccgcGUCGGCGCa -3'
miRNA:   3'- uCGCGaa--ACUGCCGGUUC------UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 94816 0.82 0.298072
Target:  5'- cAGCGCcccggUGACGGUCAAGAUCGccgacacggacgGCGCg -3'
miRNA:   3'- -UCGCGaa---ACUGCCGGUUCUAGC------------UGCG- -5'
7901 5' -53 NC_001973.1 + 59541 0.79 0.400068
Target:  5'- uGCGCUUggacGCGGCCAAGggCGuCGCg -3'
miRNA:   3'- uCGCGAAac--UGCCGGUUCuaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 144741 0.78 0.46347
Target:  5'- cGGCgGCggaGGCGGCCGAGGaggCGGCGCg -3'
miRNA:   3'- -UCG-CGaaaCUGCCGGUUCUa--GCUGCG- -5'
7901 5' -53 NC_001973.1 + 6385 0.77 0.500993
Target:  5'- cGCGCUucgagcaaacguuUUGAUGGCCGAGugcgcggcggCGGCGCg -3'
miRNA:   3'- uCGCGA-------------AACUGCCGGUUCua--------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 119204 0.77 0.531745
Target:  5'- aAGCGC---GGCGGCUcgcccugcgucGAGGUCGACGCc -3'
miRNA:   3'- -UCGCGaaaCUGCCGG-----------UUCUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 61813 0.76 0.56213
Target:  5'- cGaCGCUcgUGGCGGCCGGGAUguACGCg -3'
miRNA:   3'- uC-GCGAa-ACUGCCGGUUCUAgcUGCG- -5'
7901 5' -53 NC_001973.1 + 123342 0.76 0.571342
Target:  5'- cGCGCUccagcacgGACGGCCGuuugcggGGAUCGcACGCc -3'
miRNA:   3'- uCGCGAaa------CUGCCGGU-------UCUAGC-UGCG- -5'
7901 5' -53 NC_001973.1 + 120360 0.75 0.603313
Target:  5'- cGCGaucUGGCGGCCAAGA-CGGCGa -3'
miRNA:   3'- uCGCgaaACUGCCGGUUCUaGCUGCg -5'
7901 5' -53 NC_001973.1 + 121013 0.74 0.686202
Target:  5'- gGGCGCgUUGGCGGCCAAG-UCc-UGCa -3'
miRNA:   3'- -UCGCGaAACUGCCGGUUCuAGcuGCG- -5'
7901 5' -53 NC_001973.1 + 46498 0.74 0.686202
Target:  5'- cGCGCg--GACGGCC----UCGGCGCc -3'
miRNA:   3'- uCGCGaaaCUGCCGGuucuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 35689 0.73 0.716768
Target:  5'- cGGCGCggUGGCGGCgAuGcgCGACGa -3'
miRNA:   3'- -UCGCGaaACUGCCGgUuCuaGCUGCg -5'
7901 5' -53 NC_001973.1 + 96035 0.73 0.740751
Target:  5'- cGCGCgagcucgggcugGGCGGUCuguucgcguggGAGAUCGACGCc -3'
miRNA:   3'- uCGCGaaa---------CUGCCGG-----------UUCUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 13434 0.73 0.754489
Target:  5'- aAGCGCaacaucgacGCGGCCAGcGUCGugGCg -3'
miRNA:   3'- -UCGCGaaac-----UGCCGGUUcUAGCugCG- -5'
7901 5' -53 NC_001973.1 + 59118 0.73 0.756435
Target:  5'- gAGCGCguucgUGGCCAAG-UUGGCGCg -3'
miRNA:   3'- -UCGCGaaacuGCCGGUUCuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 45197 0.73 0.756435
Target:  5'- uGCGCUc-GAucUGGCCGGGcgCGAUGCg -3'
miRNA:   3'- uCGCGAaaCU--GCCGGUUCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 54257 0.73 0.756435
Target:  5'- uAGCGCaacgcgUGGCGGUUGAcGUUGACGCa -3'
miRNA:   3'- -UCGCGaa----ACUGCCGGUUcUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 44497 0.72 0.766092
Target:  5'- cGGCGCg--GGCGGuuCCAuu-UCGACGCg -3'
miRNA:   3'- -UCGCGaaaCUGCC--GGUucuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 152389 0.72 0.766092
Target:  5'- cGGCGCg--GGCGGgCGcGGggCGGCGCg -3'
miRNA:   3'- -UCGCGaaaCUGCCgGU-UCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 106419 0.72 0.766092
Target:  5'- cGGCGC---GAC-GCCGAGcgCGGCGCa -3'
miRNA:   3'- -UCGCGaaaCUGcCGGUUCuaGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.