miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 3' -53 NC_001973.1 + 133853 0.83 0.247396
Target:  5'- ---aUGCaCUUGCCGCCGUCCGuguaGCGCa -3'
miRNA:   3'- aaaaAUGcGAACGGCGGCAGGC----UGCG- -5'
7911 3' -53 NC_001973.1 + 158620 0.8 0.352878
Target:  5'- -----cCGCcgUUGCCGCCGcCCGGCGCg -3'
miRNA:   3'- aaaaauGCG--AACGGCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 154027 0.78 0.45774
Target:  5'- -gUUUGaGCUUGUCGCCGggcCCGAUGCa -3'
miRNA:   3'- aaAAAUgCGAACGGCGGCa--GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 109840 0.75 0.597847
Target:  5'- ---cUGCGCUUccgcggcgucGCCGCCG-CCGACGa -3'
miRNA:   3'- aaaaAUGCGAA----------CGGCGGCaGGCUGCg -5'
7911 3' -53 NC_001973.1 + 124498 0.75 0.608266
Target:  5'- ----cGCGCUcUGCCGgCGcuggCCGACGCg -3'
miRNA:   3'- aaaaaUGCGA-ACGGCgGCa---GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 120161 0.75 0.608266
Target:  5'- ----aGCGUUUGCaCGCUGUCgGugGCu -3'
miRNA:   3'- aaaaaUGCGAACG-GCGGCAGgCugCG- -5'
7911 3' -53 NC_001973.1 + 109540 0.75 0.629151
Target:  5'- cUUUUgggGCGCgaGCCGCgCGaacgCCGGCGCg -3'
miRNA:   3'- -AAAAa--UGCGaaCGGCG-GCa---GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 32552 0.75 0.629151
Target:  5'- ----gGCGaucGCCGCCG-CCGACGCc -3'
miRNA:   3'- aaaaaUGCgaaCGGCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 155637 0.74 0.650045
Target:  5'- ------aGCUUGCaGCCGcUCCGGCGCc -3'
miRNA:   3'- aaaaaugCGAACGgCGGC-AGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 25718 0.74 0.660474
Target:  5'- --cUUGCGCgccGCCcgcGCCG-CCGGCGCg -3'
miRNA:   3'- aaaAAUGCGaa-CGG---CGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 36697 0.74 0.681252
Target:  5'- ----cGCGCg-GCCGUCGUCCGcuuCGCg -3'
miRNA:   3'- aaaaaUGCGaaCGGCGGCAGGCu--GCG- -5'
7911 3' -53 NC_001973.1 + 22968 0.73 0.701861
Target:  5'- ---gUACGCgcggcgGCgCGCCGacgCCGACGCc -3'
miRNA:   3'- aaaaAUGCGaa----CG-GCGGCa--GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 65773 0.73 0.712079
Target:  5'- ---aUGCGCaUGCUGaCGcCCGACGCg -3'
miRNA:   3'- aaaaAUGCGaACGGCgGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 109504 0.73 0.712079
Target:  5'- ----aACGCcgccGCCGCCGUUCGcCGCu -3'
miRNA:   3'- aaaaaUGCGaa--CGGCGGCAGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 76233 0.73 0.712079
Target:  5'- ----gACGCggcgGCCGCCGUCUacaGCGCc -3'
miRNA:   3'- aaaaaUGCGaa--CGGCGGCAGGc--UGCG- -5'
7911 3' -53 NC_001973.1 + 103941 0.73 0.732291
Target:  5'- ----gGCGCgggGCgUGCCGUCgCGGCGCc -3'
miRNA:   3'- aaaaaUGCGaa-CG-GCGGCAG-GCUGCG- -5'
7911 3' -53 NC_001973.1 + 81885 0.73 0.732291
Target:  5'- ---aUGCGCgugucgGCCG-CGUcCCGACGCa -3'
miRNA:   3'- aaaaAUGCGaa----CGGCgGCA-GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 82799 0.73 0.742267
Target:  5'- ----gGCGCUgaUGCCGCCcaaCGGCGCc -3'
miRNA:   3'- aaaaaUGCGA--ACGGCGGcagGCUGCG- -5'
7911 3' -53 NC_001973.1 + 107885 0.73 0.742267
Target:  5'- ----cGCGCcgGCCGuuGgCCGACGCc -3'
miRNA:   3'- aaaaaUGCGaaCGGCggCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 39253 0.72 0.751159
Target:  5'- --cUUugGUUUugagggcGUCGCCGUCgCGGCGCa -3'
miRNA:   3'- aaaAAugCGAA-------CGGCGGCAG-GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.