miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 3' -53 NC_001973.1 + 3218 0.66 0.968327
Target:  5'- -----uCGCUcaaauccUGCaCGCCGUUCGcCGCg -3'
miRNA:   3'- aaaaauGCGA-------ACG-GCGGCAGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 4213 0.71 0.834911
Target:  5'- ---aUGCGCUggaagGCgCGCCuG-CCGGCGCu -3'
miRNA:   3'- aaaaAUGCGAa----CG-GCGG-CaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 4983 0.67 0.962027
Target:  5'- ---gUGCGaccgaaggUGUCGUCGUUgGACGCg -3'
miRNA:   3'- aaaaAUGCga------ACGGCGGCAGgCUGCG- -5'
7911 3' -53 NC_001973.1 + 5163 0.66 0.979323
Target:  5'- ------aGCUgGuuGgUGUCCGGCGCg -3'
miRNA:   3'- aaaaaugCGAaCggCgGCAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 5946 0.66 0.974383
Target:  5'- ---aUGCGCgacGCgGCCGgCgGAUGCg -3'
miRNA:   3'- aaaaAUGCGaa-CGgCGGCaGgCUGCG- -5'
7911 3' -53 NC_001973.1 + 6242 0.66 0.965443
Target:  5'- --aUUGCGCgaaaaCGCCuGUUCGGCGUg -3'
miRNA:   3'- aaaAAUGCGaacg-GCGG-CAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 6441 0.67 0.962027
Target:  5'- ----cGCGCccGUCGCCGgagCCGugcuCGCg -3'
miRNA:   3'- aaaaaUGCGaaCGGCGGCa--GGCu---GCG- -5'
7911 3' -53 NC_001973.1 + 7083 0.66 0.968636
Target:  5'- ----aGCGCgaGuuGa-GUCCGGCGCg -3'
miRNA:   3'- aaaaaUGCGaaCggCggCAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 7877 0.71 0.79967
Target:  5'- ----gGCGCguuuUGCaaCGCCG-CCGGCGCg -3'
miRNA:   3'- aaaaaUGCGa---ACG--GCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 8624 0.67 0.958384
Target:  5'- ----gACGac-GCCGCCGaggCCGACGa -3'
miRNA:   3'- aaaaaUGCgaaCGGCGGCa--GGCUGCg -5'
7911 3' -53 NC_001973.1 + 8830 0.66 0.979323
Target:  5'- ------aGCccGcCCGCCGUCCcGCGCu -3'
miRNA:   3'- aaaaaugCGaaC-GGCGGCAGGcUGCG- -5'
7911 3' -53 NC_001973.1 + 10330 0.68 0.938567
Target:  5'- ----gGCGCUcguugaggucggcgaUGCgGCCGUUCGGCugGCa -3'
miRNA:   3'- aaaaaUGCGA---------------ACGgCGGCAGGCUG--CG- -5'
7911 3' -53 NC_001973.1 + 11647 0.69 0.902317
Target:  5'- gUUUUGaacCGCUUgGCCGCUGgcauuucgCUGGCGCu -3'
miRNA:   3'- aAAAAU---GCGAA-CGGCGGCa-------GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 18038 0.72 0.781067
Target:  5'- ----cACGCUcaacuuguUGCCGCCGU-CGAUGUa -3'
miRNA:   3'- aaaaaUGCGA--------ACGGCGGCAgGCUGCG- -5'
7911 3' -53 NC_001973.1 + 20387 0.67 0.946042
Target:  5'- ----gGCGCUucccUGCCcUCGUUCGugGCc -3'
miRNA:   3'- aaaaaUGCGA----ACGGcGGCAGGCugCG- -5'
7911 3' -53 NC_001973.1 + 21571 0.7 0.851412
Target:  5'- ----cGCGCgggguugaagUGCuCGCCGgCCGACGUg -3'
miRNA:   3'- aaaaaUGCGa---------ACG-GCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 22486 0.72 0.752142
Target:  5'- --aUUGCGCUcggacgagGCUGCCGUgCGuGCGCg -3'
miRNA:   3'- aaaAAUGCGAa-------CGGCGGCAgGC-UGCG- -5'
7911 3' -53 NC_001973.1 + 22968 0.73 0.701861
Target:  5'- ---gUACGCgcggcgGCgCGCCGacgCCGACGCc -3'
miRNA:   3'- aaaaAUGCGaa----CG-GCGGCa--GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 24143 0.7 0.867084
Target:  5'- ---gUGCGCgcGCCGcCCGcCuCGGCGCu -3'
miRNA:   3'- aaaaAUGCGaaCGGC-GGCaG-GCUGCG- -5'
7911 3' -53 NC_001973.1 + 24169 0.7 0.851412
Target:  5'- ----gGCGC-UGCCGCUGcggCCGcgGCGCg -3'
miRNA:   3'- aaaaaUGCGaACGGCGGCa--GGC--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.