miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 5' -58.7 NC_001973.1 + 62586 0.66 0.795014
Target:  5'- cGGGCGcaGCG-ACGCGUCgCucgAGCGACGcGUc -3'
miRNA:   3'- -UCCGC--CGCuUGCGCAG-G---UCGUUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 95770 0.66 0.794132
Target:  5'- cGGcGUGGCcauguacGGGCGCGgcuggaCCGGCGugACGGCu -3'
miRNA:   3'- -UC-CGCCG-------CUUGCGCa-----GGUCGU--UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 24594 0.67 0.786133
Target:  5'- gGGGCGGC--AUGCaccgCCAccaaaacgcGCGGCGGCa -3'
miRNA:   3'- -UCCGCCGcuUGCGca--GGU---------CGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 16925 0.67 0.785237
Target:  5'- cGGCGGCGcagcaaaaagaagGGCGUuUCC-GCGaaGCGGCc -3'
miRNA:   3'- uCCGCCGC-------------UUGCGcAGGuCGU--UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 124311 0.67 0.783442
Target:  5'- cGGCGGC--ACGCGcUCgAGCGAgcugcacgccgacgUGGCg -3'
miRNA:   3'- uCCGCCGcuUGCGC-AGgUCGUU--------------GCCG- -5'
7911 5' -58.7 NC_001973.1 + 3564 0.67 0.77712
Target:  5'- cGGCGGgGcGCGCGaUgAcCGACGGCg -3'
miRNA:   3'- uCCGCCgCuUGCGCaGgUcGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 10340 0.67 0.77712
Target:  5'- gAGGuCGGCGAuGCGgcCGUUCGGC--UGGCa -3'
miRNA:   3'- -UCC-GCCGCU-UGC--GCAGGUCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 133456 0.67 0.77712
Target:  5'- cGGCGcGCGGGuCGCGcacggagcgCCAGCgGGCGaGCa -3'
miRNA:   3'- uCCGC-CGCUU-GCGCa--------GGUCG-UUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 109545 0.67 0.767984
Target:  5'- gGGGC-GCGAgccGCGCGaacgCCGGCGcgggGCGGg -3'
miRNA:   3'- -UCCGcCGCU---UGCGCa---GGUCGU----UGCCg -5'
7911 5' -58.7 NC_001973.1 + 86939 0.67 0.767984
Target:  5'- cAGGUGcGCGuuCGuCGUCaAGCcGACGGCg -3'
miRNA:   3'- -UCCGC-CGCuuGC-GCAGgUCG-UUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 56182 0.67 0.767984
Target:  5'- cGGCGGCGcgcucGACGUaGUCgcuuucguCGGCGuCGGCg -3'
miRNA:   3'- uCCGCCGC-----UUGCG-CAG--------GUCGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 8254 0.67 0.767984
Target:  5'- cGGCGGCcacuuGCGCGUUCGuGUGccuggacgacuGCGGCu -3'
miRNA:   3'- uCCGCCGcu---UGCGCAGGU-CGU-----------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 38965 0.67 0.767984
Target:  5'- gAGGcCGGCGAGCGUuuauaaaCCGaCGGCGGUg -3'
miRNA:   3'- -UCC-GCCGCUUGCGca-----GGUcGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 122574 0.67 0.767064
Target:  5'- uGGcCGGaCGGGCGCcgGUCCGaaucuuuGCuGCGGCg -3'
miRNA:   3'- uCC-GCC-GCUUGCG--CAGGU-------CGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 72471 0.67 0.767064
Target:  5'- gAGcuCGGCGGACGCGUaaaaucuuacgcgUCGGCcgggucGCGGCa -3'
miRNA:   3'- -UCc-GCCGCUUGCGCA-------------GGUCGu-----UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 142601 0.67 0.758733
Target:  5'- gGGGCGcaaGCGGAgGCGcUCCGaagggcGCGACGaGCu -3'
miRNA:   3'- -UCCGC---CGCUUgCGC-AGGU------CGUUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 40467 0.67 0.758733
Target:  5'- cGGCGuuGCGAuugaaaucgacGCGCGUCagCGGCcugaucaccguGACGGCg -3'
miRNA:   3'- uCCGC--CGCU-----------UGCGCAG--GUCG-----------UUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 10711 0.67 0.755937
Target:  5'- cGGGCGGCucgauGAGCGgcacCGUCgAGUugucgaagcgcaucAGCGGCg -3'
miRNA:   3'- -UCCGCCG-----CUUGC----GCAGgUCG--------------UUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 35674 0.67 0.749376
Target:  5'- cGGcGCGGCcGACgGCGgCgCGGUGGCGGCg -3'
miRNA:   3'- -UC-CGCCGcUUG-CGCaG-GUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 81176 0.67 0.749376
Target:  5'- cGGGCGuCGggUcgGCGg-CGGCGACGGUg -3'
miRNA:   3'- -UCCGCcGCuuG--CGCagGUCGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.