miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 5' -58.7 NC_001973.1 + 55842 0.84 0.092399
Target:  5'- cGGCgagGGCGAGCGCG-CCcGCAACGGCg -3'
miRNA:   3'- uCCG---CCGCUUGCGCaGGuCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 133283 0.83 0.105091
Target:  5'- -cGCGGCcgaGAACGCGgCCGGCGGCGGCg -3'
miRNA:   3'- ucCGCCG---CUUGCGCaGGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 94725 0.82 0.119409
Target:  5'- gAGGCGGcCGGcaagcGCGCGUCCgugugcgucucgAGCGGCGGCa -3'
miRNA:   3'- -UCCGCC-GCU-----UGCGCAGG------------UCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 31373 0.82 0.12563
Target:  5'- cGGCGGUG--UGCG-CCAGCGACGGCa -3'
miRNA:   3'- uCCGCCGCuuGCGCaGGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 38339 0.8 0.165506
Target:  5'- uGGCGGCGucaGUGccgCCGGCGGCGGCg -3'
miRNA:   3'- uCCGCCGCuugCGCa--GGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 120631 0.8 0.169647
Target:  5'- uGGUGGaCGAGCGCG-CCGGCGACGaGUa -3'
miRNA:   3'- uCCGCC-GCUUGCGCaGGUCGUUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 122619 0.79 0.182632
Target:  5'- cGGCGGCGccGACGCGggcgCCGGCGuCGGUc -3'
miRNA:   3'- uCCGCCGC--UUGCGCa---GGUCGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 7672 0.79 0.187152
Target:  5'- cGGGCaucuGGUGuGCGUGUCguGCAACGGCa -3'
miRNA:   3'- -UCCG----CCGCuUGCGCAGguCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 59009 0.79 0.187152
Target:  5'- cGaGCGGCGccGACGUGuucuuuUCCGGCGACGGCa -3'
miRNA:   3'- uC-CGCCGC--UUGCGC------AGGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 46010 0.79 0.201307
Target:  5'- cGGCGcGCGAGCGCcuGUCUGGCcAugGGCg -3'
miRNA:   3'- uCCGC-CGCUUGCG--CAGGUCG-UugCCG- -5'
7911 5' -58.7 NC_001973.1 + 83954 0.78 0.226965
Target:  5'- cGGaGGCGGGCGCGUCgaGGCAGCaGGCc -3'
miRNA:   3'- uCCgCCGCUUGCGCAGg-UCGUUG-CCG- -5'
7911 5' -58.7 NC_001973.1 + 30372 0.78 0.234629
Target:  5'- cGGcGCGGCGAcucgggugcgggccgGCGCGg-CGGCGGCGGCg -3'
miRNA:   3'- -UC-CGCCGCU---------------UGCGCagGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 98345 0.78 0.23798
Target:  5'- cGGCGGCGGcGCGCGUUCGGCcGCuuucgGGCu -3'
miRNA:   3'- uCCGCCGCU-UGCGCAGGUCGuUG-----CCG- -5'
7911 5' -58.7 NC_001973.1 + 104238 0.77 0.243654
Target:  5'- cGGCGcGCu-GCGCGUCCgucagcuguucGGCGGCGGCg -3'
miRNA:   3'- uCCGC-CGcuUGCGCAGG-----------UCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 28948 0.77 0.261351
Target:  5'- gGGGCGGC-AGCGgGggCCGGCAgucggGCGGCg -3'
miRNA:   3'- -UCCGCCGcUUGCgCa-GGUCGU-----UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 121237 0.77 0.267478
Target:  5'- cGGCGGCGcGGCGCGUCgcagaacagggUGGCGACGcGCg -3'
miRNA:   3'- uCCGCCGC-UUGCGCAG-----------GUCGUUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 144741 0.76 0.28008
Target:  5'- cGGCGGCGGAgGCGgCCgaggaGGCGGCGcGCg -3'
miRNA:   3'- uCCGCCGCUUgCGCaGG-----UCGUUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 6195 0.76 0.28008
Target:  5'- cGGUGGUGAucaaccggcgGCGCGgugCCGGCG-CGGCg -3'
miRNA:   3'- uCCGCCGCU----------UGCGCa--GGUCGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 11356 0.76 0.29315
Target:  5'- cGGuUGGCGAGuuugucggUGCGUUCGGUAACGGCu -3'
miRNA:   3'- uCC-GCCGCUU--------GCGCAGGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 83042 0.75 0.313638
Target:  5'- gAGGCGGCGcGCcCGUCgAGCccGCGGCc -3'
miRNA:   3'- -UCCGCCGCuUGcGCAGgUCGu-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.