miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 5' -58.7 NC_001973.1 + 3564 0.67 0.77712
Target:  5'- cGGCGGgGcGCGCGaUgAcCGACGGCg -3'
miRNA:   3'- uCCGCCgCuUGCGCaGgUcGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 4348 0.66 0.837166
Target:  5'- cGGCGGCcguGAuCGUauaUCCAcGCGGCGGUc -3'
miRNA:   3'- uCCGCCG---CUuGCGc--AGGU-CGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 4649 0.73 0.414612
Target:  5'- cGGCGGCGGGCGCcgUCGGCGAguCGGa -3'
miRNA:   3'- uCCGCCGCUUGCGcaGGUCGUU--GCCg -5'
7911 5' -58.7 NC_001973.1 + 4992 0.68 0.711052
Target:  5'- aAGGUGucgucguUGGACGCGUCCAcuaCGACGGUg -3'
miRNA:   3'- -UCCGCc------GCUUGCGCAGGUc--GUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 5852 0.75 0.330796
Target:  5'- cGGCGaGCGcACGCG-CCGGCGucucgagaggcugguGCGGCg -3'
miRNA:   3'- uCCGC-CGCuUGCGCaGGUCGU---------------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 5956 0.75 0.334457
Target:  5'- cGGcCGGCGGAUGCGacgUCCuGCAcuugcacGCGGCg -3'
miRNA:   3'- uCC-GCCGCUUGCGC---AGGuCGU-------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 6117 0.68 0.70813
Target:  5'- cGGCGcGCGAGgGCG-CCgcgauacgccgccuGGaCGGCGGCa -3'
miRNA:   3'- uCCGC-CGCUUgCGCaGG--------------UC-GUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 6195 0.76 0.28008
Target:  5'- cGGUGGUGAucaaccggcgGCGCGgugCCGGCG-CGGCg -3'
miRNA:   3'- uCCGCCGCU----------UGCGCa--GGUCGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 6420 0.66 0.837166
Target:  5'- cGGCGGCG-GCGCG-CCGaCgAGCGcGCc -3'
miRNA:   3'- uCCGCCGCuUGCGCaGGUcG-UUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 6510 0.69 0.651818
Target:  5'- uGGGCGGCGcGgGCGUgCCGaCGauuuuGCGGCu -3'
miRNA:   3'- -UCCGCCGCuUgCGCA-GGUcGU-----UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 7672 0.79 0.187152
Target:  5'- cGGGCaucuGGUGuGCGUGUCguGCAACGGCa -3'
miRNA:   3'- -UCCG----CCGCuUGCGCAGguCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 7753 0.74 0.373472
Target:  5'- cGGC-GCGAAcCGCGg-CGGCGGCGGCg -3'
miRNA:   3'- uCCGcCGCUU-GCGCagGUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 7842 0.7 0.611921
Target:  5'- cGGGCGGCGccGCGCccGUCgAGC--UGGCg -3'
miRNA:   3'- -UCCGCCGCu-UGCG--CAGgUCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 7922 0.71 0.514055
Target:  5'- gAGGCGgagcGCGuguGCGCGgCCGGCGugGuGCa -3'
miRNA:   3'- -UCCGC----CGCu--UGCGCaGGUCGUugC-CG- -5'
7911 5' -58.7 NC_001973.1 + 8078 0.69 0.651818
Target:  5'- cGGC-GCGcACGCGuUCCcGCuGACGGCg -3'
miRNA:   3'- uCCGcCGCuUGCGC-AGGuCG-UUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 8174 0.66 0.795014
Target:  5'- cGGCGGgucgacggaCGAGCGCG-CCG---ACGGCa -3'
miRNA:   3'- uCCGCC---------GCUUGCGCaGGUcguUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 8254 0.67 0.767984
Target:  5'- cGGCGGCcacuuGCGCGUUCGuGUGccuggacgacuGCGGCu -3'
miRNA:   3'- uCCGCCGcu---UGCGCAGGU-CGU-----------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 10172 0.66 0.812348
Target:  5'- cGGGUGGuCGAcccgcacgaaGC-CGUCgCGGC-ACGGCg -3'
miRNA:   3'- -UCCGCC-GCU----------UGcGCAG-GUCGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 10340 0.67 0.77712
Target:  5'- gAGGuCGGCGAuGCGgcCGUUCGGC--UGGCa -3'
miRNA:   3'- -UCC-GCCGCU-UGC--GCAGGUCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 10711 0.67 0.755937
Target:  5'- cGGGCGGCucgauGAGCGgcacCGUCgAGUugucgaagcgcaucAGCGGCg -3'
miRNA:   3'- -UCCGCCG-----CUUGC----GCAGgUCG--------------UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.