miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7959 5' -64.9 NC_001973.1 + 24135 0.78 0.093324
Target:  5'- gCUCGCGggugcgcGCGcCGCCCGCCUCGGCGcugGCg -3'
miRNA:   3'- -GAGCGCa------CGC-GCGGGUGGGGCCGC---UG- -5'
7959 5' -64.9 NC_001973.1 + 23252 0.77 0.107448
Target:  5'- -cCGCGUgucgcugccccgccGCGCGCgCUugCCCGGCGGCg -3'
miRNA:   3'- gaGCGCA--------------CGCGCG-GGugGGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 77366 0.76 0.131631
Target:  5'- -aCGCGgccGCGCGCCCGCgCgCCGGCGcCg -3'
miRNA:   3'- gaGCGCa--CGCGCGGGUG-G-GGCCGCuG- -5'
7959 5' -64.9 NC_001973.1 + 55849 0.75 0.145001
Target:  5'- --gGCGaGCGCGCCCGCaaCGGCGGCc -3'
miRNA:   3'- gagCGCaCGCGCGGGUGggGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 86592 0.75 0.148533
Target:  5'- gCUCGC--GCGCGCCgGCCuuuucuacaCCGGCGACa -3'
miRNA:   3'- -GAGCGcaCGCGCGGgUGG---------GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 94402 0.75 0.148533
Target:  5'- gUCGCGgcccgcgGCGcCGCCCGgaCCGGCGGCg -3'
miRNA:   3'- gAGCGCa------CGC-GCGGGUggGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 30382 0.73 0.206771
Target:  5'- aCUCGgGUGCGgGCCgGCgCggCGGCGGCg -3'
miRNA:   3'- -GAGCgCACGCgCGGgUGgG--GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 73750 0.73 0.221583
Target:  5'- uUCGCGUcGCGCGCguaCACCaCCGacGCGGCg -3'
miRNA:   3'- gAGCGCA-CGCGCGg--GUGG-GGC--CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 37119 0.72 0.246596
Target:  5'- uUCGCGUacaccgaagccguaGCGCccaguCCCACCCCGGaGACg -3'
miRNA:   3'- gAGCGCA--------------CGCGc----GGGUGGGGCCgCUG- -5'
7959 5' -64.9 NC_001973.1 + 53838 0.71 0.259668
Target:  5'- gUCGaCGacCGaGCUCGCCCCGGCGGCg -3'
miRNA:   3'- gAGC-GCacGCgCGGGUGGGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 110769 0.71 0.259668
Target:  5'- uCUCGagacgGCG-GCCUGCUCCGGCGGCa -3'
miRNA:   3'- -GAGCgca--CGCgCGGGUGGGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 86983 0.71 0.265525
Target:  5'- -cCGCG-GCGcCGUCCGCCCCGccCGACg -3'
miRNA:   3'- gaGCGCaCGC-GCGGGUGGGGCc-GCUG- -5'
7959 5' -64.9 NC_001973.1 + 29023 0.71 0.27756
Target:  5'- -aCGCGU-CGCGguaCGCCUCGGCGACg -3'
miRNA:   3'- gaGCGCAcGCGCgg-GUGGGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 101228 0.71 0.27756
Target:  5'- gUCGCGccacaGCGCGCCCACCagaGGCa-- -3'
miRNA:   3'- gAGCGCa----CGCGCGGGUGGgg-CCGcug -5'
7959 5' -64.9 NC_001973.1 + 95248 0.71 0.283739
Target:  5'- -gCGCGUGC-UGCCCuCCaUCGGCGGCu -3'
miRNA:   3'- gaGCGCACGcGCGGGuGG-GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 106847 0.71 0.283739
Target:  5'- -cCGCGccCGCGCCCGCgCCCGcGCGGu -3'
miRNA:   3'- gaGCGCacGCGCGGGUG-GGGC-CGCUg -5'
7959 5' -64.9 NC_001973.1 + 45861 0.71 0.283739
Target:  5'- gUCGCGgGCGCGCgCuCCUCGGCcGCg -3'
miRNA:   3'- gAGCGCaCGCGCGgGuGGGGCCGcUG- -5'
7959 5' -64.9 NC_001973.1 + 16322 0.71 0.290026
Target:  5'- -aCGCGUGCGCGCUCGaUCCGaUGACa -3'
miRNA:   3'- gaGCGCACGCGCGGGUgGGGCcGCUG- -5'
7959 5' -64.9 NC_001973.1 + 151904 0.7 0.302927
Target:  5'- uCUCGgGccGCGCGUCCuucuCCagCCGGCGGCa -3'
miRNA:   3'- -GAGCgCa-CGCGCGGGu---GG--GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 104240 0.7 0.316266
Target:  5'- -gCGCGcUGCGCGUCCgucaGCUguUCGGCGGCg -3'
miRNA:   3'- gaGCGC-ACGCGCGGG----UGG--GGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.