miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7959 5' -64.9 NC_001973.1 + 548 0.66 0.517928
Target:  5'- uUCGCGaaaacucGCGUcCCCGCCCa-GCGACg -3'
miRNA:   3'- gAGCGCa------CGCGcGGGUGGGgcCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 3772 0.66 0.508788
Target:  5'- -cCGCGcGCGCGCCCcguCCaCGGCcGCc -3'
miRNA:   3'- gaGCGCaCGCGCGGGu--GGgGCCGcUG- -5'
7959 5' -64.9 NC_001973.1 + 4311 0.69 0.358904
Target:  5'- gUCGaUGaGCGCGCCCAgCCCGcGCucGACg -3'
miRNA:   3'- gAGC-GCaCGCGCGGGUgGGGC-CG--CUG- -5'
7959 5' -64.9 NC_001973.1 + 5676 0.66 0.517928
Target:  5'- uUCGCGU-CGCuGCCCGCCCgCuuucGCGAg -3'
miRNA:   3'- gAGCGCAcGCG-CGGGUGGG-Gc---CGCUg -5'
7959 5' -64.9 NC_001973.1 + 7277 0.69 0.389485
Target:  5'- -gCGCG-GCGCGCCCGCUaCCGGg--- -3'
miRNA:   3'- gaGCGCaCGCGCGGGUGG-GGCCgcug -5'
7959 5' -64.9 NC_001973.1 + 7932 0.66 0.545717
Target:  5'- -gCGUGUGCGCGgCCGgCgUGGUGcACg -3'
miRNA:   3'- gaGCGCACGCGCgGGUgGgGCCGC-UG- -5'
7959 5' -64.9 NC_001973.1 + 9117 0.67 0.499717
Target:  5'- -cCGCGU-UGCGCUCGCacaCGGCGAUg -3'
miRNA:   3'- gaGCGCAcGCGCGGGUGgg-GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 16322 0.71 0.290026
Target:  5'- -aCGCGUGCGCGCUCGaUCCGaUGACa -3'
miRNA:   3'- gaGCGCACGCGCGGGUgGGGCcGCUG- -5'
7959 5' -64.9 NC_001973.1 + 16901 0.66 0.527132
Target:  5'- uUCGCGccgGCgGCGgCgGCCUcuCGGCGGCg -3'
miRNA:   3'- gAGCGCa--CG-CGCgGgUGGG--GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 16981 0.67 0.499717
Target:  5'- gUCGUGgcgGcCGCGCCCGCCaUCGGauacugcacCGACu -3'
miRNA:   3'- gAGCGCa--C-GCGCGGGUGG-GGCC---------GCUG- -5'
7959 5' -64.9 NC_001973.1 + 18355 0.66 0.508788
Target:  5'- gCUUGCGUGCcauucGCGCgCAaaaCUCGGcCGGCg -3'
miRNA:   3'- -GAGCGCACG-----CGCGgGUg--GGGCC-GCUG- -5'
7959 5' -64.9 NC_001973.1 + 21542 0.68 0.413514
Target:  5'- uCUCgGCGUcggGCGCGCCguggUCCCGGCGcGCg -3'
miRNA:   3'- -GAG-CGCA---CGCGCGGgu--GGGGCCGC-UG- -5'
7959 5' -64.9 NC_001973.1 + 22972 0.67 0.455518
Target:  5'- -gCGCGgcgGCGCGCCgACgCCGacgcCGACg -3'
miRNA:   3'- gaGCGCa--CGCGCGGgUGgGGCc---GCUG- -5'
7959 5' -64.9 NC_001973.1 + 23252 0.77 0.107448
Target:  5'- -cCGCGUgucgcugccccgccGCGCGCgCUugCCCGGCGGCg -3'
miRNA:   3'- gaGCGCA--------------CGCGCG-GGugGGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 24135 0.78 0.093324
Target:  5'- gCUCGCGggugcgcGCGcCGCCCGCCUCGGCGcugGCg -3'
miRNA:   3'- -GAGCGCa------CGC-GCGGGUGGGGCCGC---UG- -5'
7959 5' -64.9 NC_001973.1 + 25717 0.68 0.421724
Target:  5'- cCUUGCGcGC-CGCCCGCgCCGcCGGCg -3'
miRNA:   3'- -GAGCGCaCGcGCGGGUGgGGCcGCUG- -5'
7959 5' -64.9 NC_001973.1 + 28261 0.67 0.446077
Target:  5'- --aGCGUGCGCaacucgcgaucucGCCgCGCCUCguGGCGGCc -3'
miRNA:   3'- gagCGCACGCG-------------CGG-GUGGGG--CCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 29023 0.71 0.27756
Target:  5'- -aCGCGU-CGCGguaCGCCUCGGCGACg -3'
miRNA:   3'- gaGCGCAcGCGCgg-GUGGGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 30382 0.73 0.206771
Target:  5'- aCUCGgGUGCGgGCCgGCgCggCGGCGGCg -3'
miRNA:   3'- -GAGCgCACGCgCGGgUGgG--GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 31352 0.66 0.536396
Target:  5'- -cCGCGcucUGCGUGgUCGCCgCGGCGGu -3'
miRNA:   3'- gaGCGC---ACGCGCgGGUGGgGCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.