miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 3' -60.3 NC_001973.1 + 72199 0.74 0.315522
Target:  5'- aUGCUGaaguugaGCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- -ACGGCgc-----UGGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 129293 0.74 0.315522
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 160383 0.74 0.315522
Target:  5'- aGCU-CGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 12102 0.74 0.315522
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 130863 0.74 0.315522
Target:  5'- aUGCCuaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 130687 0.74 0.315522
Target:  5'- aUGCCuaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 160689 0.74 0.315522
Target:  5'- aUGCCuuaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 146065 0.74 0.322522
Target:  5'- gGCCGCGGCgCCGaGCCGGCucggGCGggcgGGGAc -3'
miRNA:   3'- aCGGCGCUG-GGC-CGGCUG----CGCa---UUCU- -5'
7967 3' -60.3 NC_001973.1 + 21156 0.74 0.329638
Target:  5'- cGCU-CGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 21051 0.74 0.33614
Target:  5'- aUGCC-CGagcucgaGCUCGGCgGGCGCGUAGGAu -3'
miRNA:   3'- -ACGGcGC-------UGGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 129135 0.73 0.344214
Target:  5'- -cCUGCGACUugaacgagcuCGGCgGACGCGUAGGAu -3'
miRNA:   3'- acGGCGCUGG----------GCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 16351 0.73 0.344214
Target:  5'- cGCCuaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 96881 0.73 0.350923
Target:  5'- gGCCGCGgaucuguGCgCGGCgGGCGCGUcGGAu -3'
miRNA:   3'- aCGGCGC-------UGgGCCGgCUGCGCAuUCU- -5'
7967 3' -60.3 NC_001973.1 + 30375 0.73 0.350923
Target:  5'- cGCgGCGACUCgggugcgGGCCGGCGCGgcGGc -3'
miRNA:   3'- aCGgCGCUGGG-------CCGGCUGCGCauUCu -5'
7967 3' -60.3 NC_001973.1 + 130765 0.73 0.359248
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGGCGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 133280 0.73 0.366161
Target:  5'- gGCCGCGGCCgagaacgCGGCCGGCgGCGg---- -3'
miRNA:   3'- aCGGCGCUGG-------GCCGGCUG-CGCauucu -5'
7967 3' -60.3 NC_001973.1 + 83791 0.73 0.370042
Target:  5'- gGUCGCGGCCCGGCacuCGgacgagcugggccgcGCGCGgcGGAg -3'
miRNA:   3'- aCGGCGCUGGGCCG---GC---------------UGCGCauUCU- -5'
7967 3' -60.3 NC_001973.1 + 82977 0.73 0.374735
Target:  5'- cGCCGCcGCCCaaGGCCGAUGCGcc-GAa -3'
miRNA:   3'- aCGGCGcUGGG--CCGGCUGCGCauuCU- -5'
7967 3' -60.3 NC_001973.1 + 160795 0.73 0.382646
Target:  5'- aGCU-CGAgCUCGGCgGGCGCGUAGGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 152361 0.72 0.398798
Target:  5'- cGCCGCGcgaaugagcgaGCCggaCGGCCGGCGCGggcGGGc -3'
miRNA:   3'- aCGGCGC-----------UGG---GCCGGCUGCGCau-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.