miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 3' -60.3 NC_001973.1 + 150883 0.84 0.071259
Target:  5'- aGCCGgGgcgcguuccacgaGCUCGGCCGACGCGUAAGAu -3'
miRNA:   3'- aCGGCgC-------------UGGGCCGGCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 36318 0.82 0.0947
Target:  5'- cGCCGCGGCCgacgCGGCCGACGCGg---- -3'
miRNA:   3'- aCGGCGCUGG----GCCGGCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 41071 0.82 0.097139
Target:  5'- -cCCGauCGAcCCCGGCCGGCGCGUAAGAu -3'
miRNA:   3'- acGGC--GCU-GGGCCGGCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 47799 0.8 0.134712
Target:  5'- gGCCGCG--CCGGCCGACGCGUGc-- -3'
miRNA:   3'- aCGGCGCugGGCCGGCUGCGCAUucu -5'
7967 3' -60.3 NC_001973.1 + 82911 0.79 0.160119
Target:  5'- cGCCGCG-CCCGaCCGACGCGUucGGc -3'
miRNA:   3'- aCGGCGCuGGGCcGGCUGCGCAuuCU- -5'
7967 3' -60.3 NC_001973.1 + 115661 0.78 0.176512
Target:  5'- aGCCGCGGCUgGGCCGACGagcaGcugGAGAa -3'
miRNA:   3'- aCGGCGCUGGgCCGGCUGCg---Ca--UUCU- -5'
7967 3' -60.3 NC_001973.1 + 20947 0.77 0.203895
Target:  5'- aGCCgGCGcgguaaacugaGCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGG-CGC-----------UGGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 19686 0.76 0.229459
Target:  5'- -aUCGCGcCUCGGCCGGCGCGUAAa- -3'
miRNA:   3'- acGGCGCuGGGCCGGCUGCGCAUUcu -5'
7967 3' -60.3 NC_001973.1 + 72363 0.76 0.234886
Target:  5'- -cUCGa-GCUCGGCCGACGCGUAAGAu -3'
miRNA:   3'- acGGCgcUGGGCCGGCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 130531 0.75 0.269738
Target:  5'- gUGCCuaaacCGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- -ACGGc----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 130609 0.75 0.282248
Target:  5'- aUGCCuaaacCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 129216 0.75 0.295213
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 130942 0.75 0.295213
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 127424 0.75 0.295213
Target:  5'- aUGCCuaaacuCGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 160611 0.75 0.295213
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 136482 0.74 0.301867
Target:  5'- aGCCgGCGGCgUGGCCGACGCuGUGGu- -3'
miRNA:   3'- aCGG-CGCUGgGCCGGCUGCG-CAUUcu -5'
7967 3' -60.3 NC_001973.1 + 16435 0.74 0.308637
Target:  5'- cGCU-CGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 16513 0.74 0.308637
Target:  5'- cGCU-CGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 2673 0.74 0.314828
Target:  5'- cGCC-CGagcucgaGCUCGGCCGACGCGUAAa- -3'
miRNA:   3'- aCGGcGC-------UGGGCCGGCUGCGCAUUcu -5'
7967 3' -60.3 NC_001973.1 + 129293 0.74 0.315522
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.