miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 3' -60.3 NC_001973.1 + 2626 0.69 0.580579
Target:  5'- cGCCG--GCCgCGGCCGAU-CGUGAGAu -3'
miRNA:   3'- aCGGCgcUGG-GCCGGCUGcGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 2673 0.74 0.314828
Target:  5'- cGCC-CGagcucgaGCUCGGCCGACGCGUAAa- -3'
miRNA:   3'- aCGGcGC-------UGGGCCGGCUGCGCAUUcu -5'
7967 3' -60.3 NC_001973.1 + 2792 0.71 0.441028
Target:  5'- cGCCuaaauUGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGGc----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 2965 0.68 0.663056
Target:  5'- cGaCgGCGACCaGGCucaacacgcuccaccCGGCGCGUAAGGc -3'
miRNA:   3'- aC-GgCGCUGGgCCG---------------GCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 6937 0.68 0.619787
Target:  5'- cGCUGCG-CCUGGaCCGGCGCa----- -3'
miRNA:   3'- aCGGCGCuGGGCC-GGCUGCGcauucu -5'
7967 3' -60.3 NC_001973.1 + 7065 0.67 0.707798
Target:  5'- aGCUGCGcGCCCuGGUCGAgCGCGaguUGAGu -3'
miRNA:   3'- aCGGCGC-UGGG-CCGGCU-GCGC---AUUCu -5'
7967 3' -60.3 NC_001973.1 + 7849 0.72 0.423828
Target:  5'- cGCCGCG-CCCGucgaGCUGGCGCGccAGGg -3'
miRNA:   3'- aCGGCGCuGGGC----CGGCUGCGCauUCU- -5'
7967 3' -60.3 NC_001973.1 + 7929 0.69 0.580579
Target:  5'- aGCgCGUGugCgCGGCCGGCGUGg---- -3'
miRNA:   3'- aCG-GCGCugG-GCCGGCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 8095 0.67 0.688453
Target:  5'- cGCUGaCGGCgagcaCCGGCCGGCuCGUGcAGAu -3'
miRNA:   3'- aCGGC-GCUG-----GGCCGGCUGcGCAU-UCU- -5'
7967 3' -60.3 NC_001973.1 + 9397 0.68 0.609956
Target:  5'- gGUCGCGAUCCGGCCGuCgGCa----- -3'
miRNA:   3'- aCGGCGCUGGGCCGGCuG-CGcauucu -5'
7967 3' -60.3 NC_001973.1 + 12102 0.74 0.315522
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 12181 0.72 0.407036
Target:  5'- aUGCCuaaacUGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 12259 0.71 0.458617
Target:  5'- aUGCCuaaacccaGCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGcgc-----UGGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 12337 0.74 0.315522
Target:  5'- aUGCCcaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 12402 0.7 0.512544
Target:  5'- aGCCGaUGAgaucauuCCCaaacuugagcucGGCUGACGCGUAGGAu -3'
miRNA:   3'- aCGGC-GCU-------GGG------------CCGGCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 16351 0.73 0.344214
Target:  5'- cGCCuaaacuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGGc-----GCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 16435 0.74 0.308637
Target:  5'- cGCU-CGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 16513 0.74 0.308637
Target:  5'- cGCU-CGAgCUCGGCgGACGCGUAAGAu -3'
miRNA:   3'- aCGGcGCU-GGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 19686 0.76 0.229459
Target:  5'- -aUCGCGcCUCGGCCGGCGCGUAAa- -3'
miRNA:   3'- acGGCGCuGGGCCGGCUGCGCAUUcu -5'
7967 3' -60.3 NC_001973.1 + 20947 0.77 0.203895
Target:  5'- aGCCgGCGcgguaaacugaGCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGG-CGC-----------UGGGCCGgCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.