Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7977 | 3' | -57.4 | NC_001973.1 | + | 24174 | 0.66 | 0.863035 |
Target: 5'- uGCcGCUGCGGC-CGcGGC-GcgUCAGCg -3' miRNA: 3'- -UGaCGACGCCGaGC-UCGaCuaGGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 132546 | 0.66 | 0.855373 |
Target: 5'- cGCgGCgGCgGGCUCGAGCgcggcGGUgUGGCg -3' miRNA: 3'- -UGaCGaCG-CCGAGCUCGa----CUAgGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 122602 | 0.66 | 0.852251 |
Target: 5'- uGCUGCggcggaggcgucgGCGGCgccgacgCGGGCg---CCGGCg -3' miRNA: 3'- -UGACGa------------CGCCGa------GCUCGacuaGGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 124701 | 0.66 | 0.847509 |
Target: 5'- --gGCgGUGGC-CGAGCUGua-CGGCa -3' miRNA: 3'- ugaCGaCGCCGaGCUCGACuagGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 23920 | 0.66 | 0.839451 |
Target: 5'- cGCUGaC-GCGGCUCGA-CUGcgCC-GCg -3' miRNA: 3'- -UGAC-GaCGCCGAGCUcGACuaGGuCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 147056 | 0.66 | 0.839451 |
Target: 5'- --cGaaGCGGUUCGuGCcGAUCUGGCg -3' miRNA: 3'- ugaCgaCGCCGAGCuCGaCUAGGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 55890 | 0.66 | 0.831206 |
Target: 5'- gGCgGCgGCaGGCUCGGGCUcGGgcUCgGGCu -3' miRNA: 3'- -UGaCGaCG-CCGAGCUCGA-CU--AGgUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 95460 | 0.66 | 0.82278 |
Target: 5'- --cGCUGCuGCUCGAGgaGcUgCGGCu -3' miRNA: 3'- ugaCGACGcCGAGCUCgaCuAgGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 73900 | 0.67 | 0.814182 |
Target: 5'- cGCUGacgUGCGGCgacgCGAGCgaGAaaUCCGcGCa -3' miRNA: 3'- -UGACg--ACGCCGa---GCUCGa-CU--AGGU-CG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 28935 | 0.67 | 0.814182 |
Target: 5'- cUUGCacGCGGCUgGGGCggcagcggGggCCGGCa -3' miRNA: 3'- uGACGa-CGCCGAgCUCGa-------CuaGGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 102439 | 0.67 | 0.787432 |
Target: 5'- aGCUGCaGCGGCUCGAaaagaacucGCUcaacUgCAGCg -3' miRNA: 3'- -UGACGaCGCCGAGCU---------CGAcu--AgGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 104258 | 0.68 | 0.730421 |
Target: 5'- aGCUGUucgGCGGCggcgccgccgcCGGGCUGGUCguGUc -3' miRNA: 3'- -UGACGa--CGCCGa----------GCUCGACUAGguCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 69312 | 0.68 | 0.730421 |
Target: 5'- cACUGC--CGGCUCgugcaGAGCuUGcgCCAGCa -3' miRNA: 3'- -UGACGacGCCGAG-----CUCG-ACuaGGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 40171 | 0.68 | 0.730421 |
Target: 5'- --cGC-GUGGCcCGAGCUGAUCU-GCa -3' miRNA: 3'- ugaCGaCGCCGaGCUCGACUAGGuCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 67607 | 0.68 | 0.730421 |
Target: 5'- --gGUUgGCGGCg-GAGCUGGUgCCGGCc -3' miRNA: 3'- ugaCGA-CGCCGagCUCGACUA-GGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 8848 | 0.68 | 0.720569 |
Target: 5'- cGCUGCUggcGCGGCgacaCGGGCUGuUCgAGa -3' miRNA: 3'- -UGACGA---CGCCGa---GCUCGACuAGgUCg -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 7065 | 0.68 | 0.708649 |
Target: 5'- --aGCUGCGcGCccuggucgagcgCGAGUUGAgUCCGGCg -3' miRNA: 3'- ugaCGACGC-CGa-----------GCUCGACU-AGGUCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 41840 | 0.69 | 0.700649 |
Target: 5'- aGCcGCgGCuGCUCGAGCUGAagaUCCgAGUc -3' miRNA: 3'- -UGaCGaCGcCGAGCUCGACU---AGG-UCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 60392 | 0.69 | 0.690598 |
Target: 5'- --aGCUGCacGCUCGAggaGCUGAUCUuGCa -3' miRNA: 3'- ugaCGACGc-CGAGCU---CGACUAGGuCG- -5' |
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7977 | 3' | -57.4 | NC_001973.1 | + | 85155 | 0.69 | 0.670359 |
Target: 5'- uCUGCUGCGcGCcCGA-CUGGUCgUAGCg -3' miRNA: 3'- uGACGACGC-CGaGCUcGACUAG-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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