miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7977 5' -53.7 NC_001973.1 + 100197 0.66 0.961289
Target:  5'- -gGCGAGcaacUCGGCUUUgUCGGGCGgcgGCa -3'
miRNA:   3'- gaCGUUCu---AGUCGAGG-AGCUCGCa--CG- -5'
7977 5' -53.7 NC_001973.1 + 120548 0.66 0.960931
Target:  5'- gCUGCAaacGGAcaAGCUgUucgugugUCGGGCGUGCu -3'
miRNA:   3'- -GACGU---UCUagUCGAgG-------AGCUCGCACG- -5'
7977 5' -53.7 NC_001973.1 + 137242 0.66 0.957611
Target:  5'- gUGCGaacGGGUgGGCUUUcgagcCGAGUGUGCg -3'
miRNA:   3'- gACGU---UCUAgUCGAGGa----GCUCGCACG- -5'
7977 5' -53.7 NC_001973.1 + 77001 0.66 0.957611
Target:  5'- -cGCu-GAUCAcCUCgUCGGGCGgcgGCg -3'
miRNA:   3'- gaCGuuCUAGUcGAGgAGCUCGCa--CG- -5'
7977 5' -53.7 NC_001973.1 + 56462 0.66 0.953702
Target:  5'- -gGCGGGcUCGGCgccaagCUCGGGCGggGCg -3'
miRNA:   3'- gaCGUUCuAGUCGag----GAGCUCGCa-CG- -5'
7977 5' -53.7 NC_001973.1 + 56516 0.66 0.953702
Target:  5'- -gGCGGGcUCGGCgccaagCUCGGGCGggGCg -3'
miRNA:   3'- gaCGUUCuAGUCGag----GAGCUCGCa-CG- -5'
7977 5' -53.7 NC_001973.1 + 61129 0.66 0.953702
Target:  5'- -cGCGGcGUC-GCUCCUCGAGCucguaccgGCg -3'
miRNA:   3'- gaCGUUcUAGuCGAGGAGCUCGca------CG- -5'
7977 5' -53.7 NC_001973.1 + 48689 0.67 0.949557
Target:  5'- aCUGCAcGGAUUucgagcacaucaAGCgcgCgCUCGAGuCGUGCu -3'
miRNA:   3'- -GACGU-UCUAG------------UCGa--G-GAGCUC-GCACG- -5'
7977 5' -53.7 NC_001973.1 + 45621 0.67 0.949557
Target:  5'- -gGCGaucAGGUCcacgcGCUCgUCGAGCGcgGCg -3'
miRNA:   3'- gaCGU---UCUAGu----CGAGgAGCUCGCa-CG- -5'
7977 5' -53.7 NC_001973.1 + 123160 0.67 0.945172
Target:  5'- uCU-CGAGGUCGGgUCCUCGucgccGGCGcGCu -3'
miRNA:   3'- -GAcGUUCUAGUCgAGGAGC-----UCGCaCG- -5'
7977 5' -53.7 NC_001973.1 + 62584 0.67 0.940544
Target:  5'- -aGCGGGcgCAGCgacgcgUCgCUCGAGCGacGCg -3'
miRNA:   3'- gaCGUUCuaGUCG------AG-GAGCUCGCa-CG- -5'
7977 5' -53.7 NC_001973.1 + 111668 0.67 0.935671
Target:  5'- gCUGCGcGggCAGCggaUCGAGCGgcUGCa -3'
miRNA:   3'- -GACGUuCuaGUCGaggAGCUCGC--ACG- -5'
7977 5' -53.7 NC_001973.1 + 28642 0.67 0.935671
Target:  5'- -aGCGAGuccugCAGCUgCgCGAGCGcgGCg -3'
miRNA:   3'- gaCGUUCua---GUCGAgGaGCUCGCa-CG- -5'
7977 5' -53.7 NC_001973.1 + 49137 0.67 0.925185
Target:  5'- gCUGCAGGcgUGGCUgCUCGAGgagGUGa -3'
miRNA:   3'- -GACGUUCuaGUCGAgGAGCUCg--CACg -5'
7977 5' -53.7 NC_001973.1 + 87056 0.68 0.907603
Target:  5'- uUGCAAGAUCuGCUUCgaaCGGccgcgcaacGUGUGCu -3'
miRNA:   3'- gACGUUCUAGuCGAGGa--GCU---------CGCACG- -5'
7977 5' -53.7 NC_001973.1 + 159551 0.68 0.901253
Target:  5'- -aGCAGGAUCuccucCUCCUCGgcggaGGuCGUGCc -3'
miRNA:   3'- gaCGUUCUAGuc---GAGGAGC-----UC-GCACG- -5'
7977 5' -53.7 NC_001973.1 + 120773 0.68 0.901253
Target:  5'- -cGCAAGcugacCGGCUUCgaGGGCGUGCg -3'
miRNA:   3'- gaCGUUCua---GUCGAGGagCUCGCACG- -5'
7977 5' -53.7 NC_001973.1 + 45863 0.7 0.82526
Target:  5'- -cGCGGGcgCGcGCUCCUCGGccGCG-GCg -3'
miRNA:   3'- gaCGUUCuaGU-CGAGGAGCU--CGCaCG- -5'
7977 5' -53.7 NC_001973.1 + 136594 0.7 0.816542
Target:  5'- -cGCGAcGcUCAGCUCgUCGGGCGccucgGCg -3'
miRNA:   3'- gaCGUU-CuAGUCGAGgAGCUCGCa----CG- -5'
7977 5' -53.7 NC_001973.1 + 85335 0.73 0.680487
Target:  5'- --uCGAGGUCGGCUCUUCGAGCccgacGCg -3'
miRNA:   3'- gacGUUCUAGUCGAGGAGCUCGca---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.