miRNA display CGI


Results 41 - 60 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 5467 0.66 0.599156
Target:  5'- aUCGCaacGUGUUGCCGCacaACCGguagaaggcucgauCGCCGCc -3'
miRNA:   3'- cAGCG---CGUAGCGGCGg--UGGC--------------GCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 109322 0.66 0.592401
Target:  5'- --aGCGCGUCGCgCGCgaACCGgaacaGCCGg -3'
miRNA:   3'- cagCGCGUAGCG-GCGg-UGGCg----CGGCg -5'
8016 3' -63.1 NC_001973.1 + 120593 0.66 0.592401
Target:  5'- -gCGCGCcgaGUCGCggugCGCCuuCCaCGCCGCc -3'
miRNA:   3'- caGCGCG---UAGCG----GCGGu-GGcGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 59310 0.66 0.592401
Target:  5'- -cCGCGCGcUCGCCGCaACC-CGaCCGa -3'
miRNA:   3'- caGCGCGU-AGCGGCGgUGGcGC-GGCg -5'
8016 3' -63.1 NC_001973.1 + 63640 0.66 0.592401
Target:  5'- -cCGCGUGggGCgGCgCGCCG-GCCGCc -3'
miRNA:   3'- caGCGCGUagCGgCG-GUGGCgCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 136757 0.66 0.592401
Target:  5'- cGUCGCGCA-CGuuGCgCACgCuCGUCGUg -3'
miRNA:   3'- -CAGCGCGUaGCggCG-GUG-GcGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 26938 0.66 0.591437
Target:  5'- cUCGUuCAUCaaucgauGCCGUUGuuGCGCCGCu -3'
miRNA:   3'- cAGCGcGUAG-------CGGCGGUggCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 6213 0.67 0.582773
Target:  5'- --gGCGCggUGCCGgCGCgGCGCCc- -3'
miRNA:   3'- cagCGCGuaGCGGCgGUGgCGCGGcg -5'
8016 3' -63.1 NC_001973.1 + 34237 0.67 0.582773
Target:  5'- -gCGCGCGUCGuuGCUGuCCaucaCGCCGa -3'
miRNA:   3'- caGCGCGUAGCggCGGU-GGc---GCGGCg -5'
8016 3' -63.1 NC_001973.1 + 48725 0.67 0.582773
Target:  5'- aGUCGUGC-UUG-CGCCGCUGC-UCGCa -3'
miRNA:   3'- -CAGCGCGuAGCgGCGGUGGCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 102616 0.67 0.582773
Target:  5'- cUCGUGCAcuugaaggaCGCgGCCACgGCG-CGCg -3'
miRNA:   3'- cAGCGCGUa--------GCGgCGGUGgCGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 113205 0.67 0.582773
Target:  5'- -aCGCGUuccacgCGuCCGCCGCguagacgggcuuCGCGUCGCu -3'
miRNA:   3'- caGCGCGua----GC-GGCGGUG------------GCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 123518 0.67 0.582773
Target:  5'- -gCGCGC-UCGCCGgCGCaGUGCagCGCg -3'
miRNA:   3'- caGCGCGuAGCGGCgGUGgCGCG--GCG- -5'
8016 3' -63.1 NC_001973.1 + 37078 0.67 0.582773
Target:  5'- aUCGCGCccgauUCcgaggaCCGCCGCCGaGCCGa -3'
miRNA:   3'- cAGCGCGu----AGc-----GGCGGUGGCgCGGCg -5'
8016 3' -63.1 NC_001973.1 + 21570 0.67 0.577011
Target:  5'- -gCGCGCGggguugaagugcUCGCCgGCCGacgugcacccguugcUCGCGUCGCc -3'
miRNA:   3'- caGCGCGU------------AGCGG-CGGU---------------GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 34846 0.67 0.577011
Target:  5'- -cUGCGC-UCGCCGCCGauuaugucacauuaCGUGCCa- -3'
miRNA:   3'- caGCGCGuAGCGGCGGUg-------------GCGCGGcg -5'
8016 3' -63.1 NC_001973.1 + 41868 0.67 0.574135
Target:  5'- aGUCGCGUGccucacguUCGCCGCCuucuucggcaacaaCGUGgCGCg -3'
miRNA:   3'- -CAGCGCGU--------AGCGGCGGug------------GCGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 62600 0.67 0.573177
Target:  5'- cGUCGCucgagcgacGCGUCGUgGUCGaCGCGCgCGCc -3'
miRNA:   3'- -CAGCG---------CGUAGCGgCGGUgGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 48372 0.67 0.573177
Target:  5'- -aCGCGUGUUGCC-CCAgUGCaCCGCc -3'
miRNA:   3'- caGCGCGUAGCGGcGGUgGCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 27887 0.67 0.573177
Target:  5'- -gCGCGCucUCGCCGCgACuCcCGuuGCg -3'
miRNA:   3'- caGCGCGu-AGCGGCGgUG-GcGCggCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.