miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 7100 0.66 0.621417
Target:  5'- -gCGCGCG-CGaCCGCCGUCGUGCuCGa -3'
miRNA:   3'- caGCGCGUaGC-GGCGGUGGCGCG-GCg -5'
8016 3' -63.1 NC_001973.1 + 7275 0.72 0.311406
Target:  5'- -gCGCGCGgcgCGCCcgcuaccgggucaaGCaCACCGCGCUGUc -3'
miRNA:   3'- caGCGCGUa--GCGG--------------CG-GUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 7595 0.68 0.489102
Target:  5'- -gCGCGCAacgaUC-CCGCCuuuUCGCGCaCGCc -3'
miRNA:   3'- caGCGCGU----AGcGGCGGu--GGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 7636 0.72 0.28081
Target:  5'- -gCGCGCGcUCGCCGCCAgCGgGCUc- -3'
miRNA:   3'- caGCGCGU-AGCGGCGGUgGCgCGGcg -5'
8016 3' -63.1 NC_001973.1 + 7812 0.69 0.465863
Target:  5'- -aCGCGCAgCGCuugCGCUcucuguugagaacggGCgGCGCCGCg -3'
miRNA:   3'- caGCGCGUaGCG---GCGG---------------UGgCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 7877 0.75 0.198602
Target:  5'- --gGCGCGUuuugcaaCGCCGCCGgCGCGuuGCa -3'
miRNA:   3'- cagCGCGUA-------GCGGCGGUgGCGCggCG- -5'
8016 3' -63.1 NC_001973.1 + 7930 0.66 0.602055
Target:  5'- -gCGCGUGUgCGCgGCCGgCGUGgUGCa -3'
miRNA:   3'- caGCGCGUA-GCGgCGGUgGCGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 7986 0.7 0.386265
Target:  5'- -gCGCGCGUacgacccgccCGCCGUUguauaagaaucggGCCGCGgCCGCg -3'
miRNA:   3'- caGCGCGUA----------GCGGCGG-------------UGGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 8063 0.68 0.507341
Target:  5'- cGUCGCGC--UGgCGCuCGgCGCGCaCGCg -3'
miRNA:   3'- -CAGCGCGuaGCgGCG-GUgGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 8191 0.69 0.461459
Target:  5'- --aGCGCGccgacggcaccgcUUGgCGCCGCUGgGCCGCc -3'
miRNA:   3'- cagCGCGU-------------AGCgGCGGUGGCgCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 8415 0.68 0.516569
Target:  5'- --gGCGCGaacgGCaagaGCCGCCGCGUCGUc -3'
miRNA:   3'- cagCGCGUag--CGg---CGGUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 8594 0.78 0.119815
Target:  5'- -cCGCGCGagaaaGCCgGCgGCCGCGCCGCg -3'
miRNA:   3'- caGCGCGUag---CGG-CGgUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 8833 0.67 0.563618
Target:  5'- -cCGCc---CGCCGUC-CCGCGCUGCu -3'
miRNA:   3'- caGCGcguaGCGGCGGuGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 9084 0.78 0.125874
Target:  5'- uGUCGCGCcgCGUgagcucggCGCgCAuCCGCGCCGCg -3'
miRNA:   3'- -CAGCGCGuaGCG--------GCG-GU-GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 10277 0.7 0.3792
Target:  5'- cGUCGCGuCGUCGaacgcggaCGCgAagcCCGCGUCGCa -3'
miRNA:   3'- -CAGCGC-GUAGCg-------GCGgU---GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 10796 0.66 0.611729
Target:  5'- cGUCGCGUAggCGCCGaCgGCgGCGagaauCGCc -3'
miRNA:   3'- -CAGCGCGUa-GCGGC-GgUGgCGCg----GCG- -5'
8016 3' -63.1 NC_001973.1 + 14933 0.71 0.348867
Target:  5'- -cCGCGCAUCGCguUGCUuucgcCCGCGCgUGCg -3'
miRNA:   3'- caGCGCGUAGCG--GCGGu----GGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 16186 0.72 0.287114
Target:  5'- uGUCgGCGCAg-GCCGCUagAgCGCGCUGCg -3'
miRNA:   3'- -CAG-CGCGUagCGGCGG--UgGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 16964 0.69 0.453589
Target:  5'- -cCGUGCccgaguuuuugGUCGUgGCgGCCGCGcCCGCc -3'
miRNA:   3'- caGCGCG-----------UAGCGgCGgUGGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 17287 0.77 0.14938
Target:  5'- aUCGCGuCGUaCGCCGCCucCCG-GCCGCa -3'
miRNA:   3'- cAGCGC-GUA-GCGGCGGu-GGCgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.