miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 902 0.68 0.471176
Target:  5'- -gCGCGCGUUcucgaGCCGCCGauucuUUGCGUCGUa -3'
miRNA:   3'- caGCGCGUAG-----CGGCGGU-----GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 1138 0.67 0.573177
Target:  5'- aGUCGCGCcUCGgcuccgaaCCGCCAUuCGU-CCGCa -3'
miRNA:   3'- -CAGCGCGuAGC--------GGCGGUG-GCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 1194 0.81 0.079092
Target:  5'- -cCGCGCAUCugcaucuucuucggaGUCGCCGCCGCcGCCGCc -3'
miRNA:   3'- caGCGCGUAG---------------CGGCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 2891 0.75 0.185439
Target:  5'- -aCGCGCGUCGUCGCgcuuugcuCGCCGCGCgaucguCGCg -3'
miRNA:   3'- caGCGCGUAGCGGCG--------GUGGCGCG------GCG- -5'
8016 3' -63.1 NC_001973.1 + 3179 0.67 0.563618
Target:  5'- -gUGCGaAUCuGCCGCU-CCGCGCuCGCc -3'
miRNA:   3'- caGCGCgUAG-CGGCGGuGGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 3372 0.72 0.302035
Target:  5'- aGUC-CGCGUCGCCgugguugccgagcGCCACCaacucgcccaccagcGCGCCGUu -3'
miRNA:   3'- -CAGcGCGUAGCGG-------------CGGUGG---------------CGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 3702 0.69 0.419524
Target:  5'- uGUCGUaGCGcCgGUCGCgACCGCGCgGCa -3'
miRNA:   3'- -CAGCG-CGUaG-CGGCGgUGGCGCGgCG- -5'
8016 3' -63.1 NC_001973.1 + 3774 0.72 0.28081
Target:  5'- -gCGCGCG-CGCCccguccacgGCCGCCGCGCacaccaaGCg -3'
miRNA:   3'- caGCGCGUaGCGG---------CGGUGGCGCGg------CG- -5'
8016 3' -63.1 NC_001973.1 + 4739 0.66 0.611729
Target:  5'- aGUCGaaCGCGUCgGCCGUCACCaguucuuugucCGCCGg -3'
miRNA:   3'- -CAGC--GCGUAG-CGGCGGUGGc----------GCGGCg -5'
8016 3' -63.1 NC_001973.1 + 4928 0.67 0.554102
Target:  5'- cGUCG-GCGggcUCGUCGCCgACCG-GCCGg -3'
miRNA:   3'- -CAGCgCGU---AGCGGCGG-UGGCgCGGCg -5'
8016 3' -63.1 NC_001973.1 + 5086 0.67 0.562665
Target:  5'- cGUUGCGCAugcggauUCGCaCGCCcgaggaCGCaCCGCa -3'
miRNA:   3'- -CAGCGCGU-------AGCG-GCGGug----GCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 5312 0.69 0.44493
Target:  5'- --gGCGCAcugcagguuggUGCCGUCGCUguGCGCCGCc -3'
miRNA:   3'- cagCGCGUa----------GCGGCGGUGG--CGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 5467 0.66 0.599156
Target:  5'- aUCGCaacGUGUUGCCGCacaACCGguagaaggcucgauCGCCGCc -3'
miRNA:   3'- cAGCG---CGUAGCGGCGg--UGGC--------------GCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 5666 0.71 0.348867
Target:  5'- cUCGCGCGUuuucgCGUCGCUGcCCGC-CCGCu -3'
miRNA:   3'- cAGCGCGUA-----GCGGCGGU-GGCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 5718 0.7 0.382329
Target:  5'- --aGCGCGUCGCC-CCGCuggguggugaccggaCGgGCCGCc -3'
miRNA:   3'- cagCGCGUAGCGGcGGUG---------------GCgCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 6119 0.69 0.462338
Target:  5'- -gCGCGCGagggCGCCGCgAUa-CGCCGCc -3'
miRNA:   3'- caGCGCGUa---GCGGCGgUGgcGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 6213 0.67 0.582773
Target:  5'- --gGCGCggUGCCGgCGCgGCGCCc- -3'
miRNA:   3'- cagCGCGuaGCGGCgGUGgCGCGGcg -5'
8016 3' -63.1 NC_001973.1 + 6295 0.68 0.46763
Target:  5'- cGUgGCGUacgacaagaucgaGUCGCUGCUguucaauugcaugcGCCGCGUCGUg -3'
miRNA:   3'- -CAgCGCG-------------UAGCGGCGG--------------UGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 6440 0.75 0.203805
Target:  5'- -gCGCGCccGUCGCCGgaGCCGUGCuCGCg -3'
miRNA:   3'- caGCGCG--UAGCGGCggUGGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 6952 0.67 0.532407
Target:  5'- --gGCGCAcggccuccggcugcUCGCCcgaacaggGCCGCCGCggcaaaacGCCGCc -3'
miRNA:   3'- cagCGCGU--------------AGCGG--------CGGUGGCG--------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.