miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 32541 0.84 0.045793
Target:  5'- uUCGCGagcucggcgAUCGCCGCCGCCGaCGCCGCc -3'
miRNA:   3'- cAGCGCg--------UAGCGGCGGUGGC-GCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 35383 0.83 0.054813
Target:  5'- -gCGCGCcgCGCUccacgGCUACCGCGCCGCg -3'
miRNA:   3'- caGCGCGuaGCGG-----CGGUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 23252 0.83 0.054813
Target:  5'- -cCGCGUGUCGCUGCCccGCCGCGCgCGCu -3'
miRNA:   3'- caGCGCGUAGCGGCGG--UGGCGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 158024 0.82 0.063898
Target:  5'- aUCGgGUGUgCGCCGCCGCCGCGCCcguGCg -3'
miRNA:   3'- cAGCgCGUA-GCGGCGGUGGCGCGG---CG- -5'
8016 3' -63.1 NC_001973.1 + 157888 0.81 0.072565
Target:  5'- cUCGUGUcggagGUCGCgGCCGCCGCGcCCGCg -3'
miRNA:   3'- cAGCGCG-----UAGCGgCGGUGGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 1194 0.81 0.079092
Target:  5'- -cCGCGCAUCugcaucuucuucggaGUCGCCGCCGCcGCCGCc -3'
miRNA:   3'- caGCGCGUAG---------------CGGCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 109848 0.81 0.080301
Target:  5'- -cCGCgGCGUCGCCGCCGCCGaCGaggaCGCg -3'
miRNA:   3'- caGCG-CGUAGCGGCGGUGGC-GCg---GCG- -5'
8016 3' -63.1 NC_001973.1 + 82961 0.8 0.086614
Target:  5'- -aCGCccGCGUCGCCGCCGCCGcCGCC-Ca -3'
miRNA:   3'- caGCG--CGUAGCGGCGGUGGC-GCGGcG- -5'
8016 3' -63.1 NC_001973.1 + 133912 0.8 0.091083
Target:  5'- cUCGCGCGUCGCCGCCGCCcUGUC-Ca -3'
miRNA:   3'- cAGCGCGUAGCGGCGGUGGcGCGGcG- -5'
8016 3' -63.1 NC_001973.1 + 119454 0.8 0.091083
Target:  5'- -cCGCGCc-CGCCGCCGCCGCcGCCGa -3'
miRNA:   3'- caGCGCGuaGCGGCGGUGGCG-CGGCg -5'
8016 3' -63.1 NC_001973.1 + 104747 0.8 0.091083
Target:  5'- cGUCGCGCAcucggcggaCGCC-CCGCCGCGCCGa -3'
miRNA:   3'- -CAGCGCGUa--------GCGGcGGUGGCGCGGCg -5'
8016 3' -63.1 NC_001973.1 + 24163 0.79 0.103229
Target:  5'- --gGCGCuggCGCUGCCGCUGCGgCCGCg -3'
miRNA:   3'- cagCGCGua-GCGGCGGUGGCGC-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 32784 0.79 0.105834
Target:  5'- cUCGUGCGacuuuUCGCCGCCGCCGCcuCCGUc -3'
miRNA:   3'- cAGCGCGU-----AGCGGCGGUGGCGc-GGCG- -5'
8016 3' -63.1 NC_001973.1 + 137832 0.79 0.105834
Target:  5'- cGUCGCGCggCGCCGCCAUCaGCgGgCGCa -3'
miRNA:   3'- -CAGCGCGuaGCGGCGGUGG-CG-CgGCG- -5'
8016 3' -63.1 NC_001973.1 + 71717 0.79 0.111232
Target:  5'- --gGCGC--CGCCGCCGCCGCGCCcccgGCg -3'
miRNA:   3'- cagCGCGuaGCGGCGGUGGCGCGG----CG- -5'
8016 3' -63.1 NC_001973.1 + 8594 0.78 0.119815
Target:  5'- -cCGCGCGagaaaGCCgGCgGCCGCGCCGCg -3'
miRNA:   3'- caGCGCGUag---CGG-CGgUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 158527 0.78 0.122507
Target:  5'- uUUGCGC--CGCCGCCACCGCcuccuccgccuccGCCGCc -3'
miRNA:   3'- cAGCGCGuaGCGGCGGUGGCG-------------CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 144351 0.78 0.123113
Target:  5'- -aUGCGCGaggacgaggacgagcCGCCGCCGCCGCcGCCGCc -3'
miRNA:   3'- caGCGCGUa--------------GCGGCGGUGGCG-CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 9084 0.78 0.125874
Target:  5'- uGUCGCGCcgCGUgagcucggCGCgCAuCCGCGCCGCg -3'
miRNA:   3'- -CAGCGCGuaGCG--------GCG-GU-GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 25706 0.77 0.138853
Target:  5'- cGUCGCcgaaGCcUUGCgCGCCGcCCGCGCCGCc -3'
miRNA:   3'- -CAGCG----CGuAGCG-GCGGU-GGCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.