miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 3' -53.6 NC_001973.1 + 41063 0.92 0.067554
Target:  5'- gGCUUGAACcCGAUcGACCCCGGCCGGc -3'
miRNA:   3'- -CGAACUUGaGCUAaCUGGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 114722 0.9 0.098285
Target:  5'- gGUUUGAACUCGAUUGACCCUuGCCGGc -3'
miRNA:   3'- -CGAACUUGAGCUAACUGGGGcCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 114565 0.84 0.223632
Target:  5'- gGCUUGAACUCuGUUGACCCUuGCCGGc -3'
miRNA:   3'- -CGAACUUGAGcUAACUGGGGcCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 40985 0.82 0.277877
Target:  5'- aUUUGAACUCGAUUGACCCUuGCCa- -3'
miRNA:   3'- cGAACUUGAGCUAACUGGGGcCGGcu -5'
8039 3' -53.6 NC_001973.1 + 114953 0.78 0.443257
Target:  5'- gGCUUGAACUCuGUUaACCCCuGCCGAc -3'
miRNA:   3'- -CGAACUUGAGcUAAcUGGGGcCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 40907 0.78 0.461698
Target:  5'- aUUUGAACUCGA-UGACCCUaGCCGGc -3'
miRNA:   3'- cGAACUUGAGCUaACUGGGGcCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 115031 0.77 0.519276
Target:  5'- gGUUUGAACcCGAUcGACCCCGGCg-- -3'
miRNA:   3'- -CGAACUUGaGCUAaCUGGGGCCGgcu -5'
8039 3' -53.6 NC_001973.1 + 114875 0.76 0.529157
Target:  5'- gGCUUGAACUCuGUUaACCCCuGCCGGc -3'
miRNA:   3'- -CGAACUUGAGcUAAcUGGGGcCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 128557 0.72 0.780266
Target:  5'- uGCUUGAAC-CGcUUGGCCgCCGGCa-- -3'
miRNA:   3'- -CGAACUUGaGCuAACUGG-GGCCGgcu -5'
8039 3' -53.6 NC_001973.1 + 126089 0.7 0.850507
Target:  5'- -gUUGAGCcCGAgagcgugccgacgcgUGAgCCCGGCCGGg -3'
miRNA:   3'- cgAACUUGaGCUa--------------ACUgGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 12423 0.7 0.868236
Target:  5'- aCUUGAGCUCGGcUGACgCguaggauuuuacgcgUCGGCCGGg -3'
miRNA:   3'- cGAACUUGAGCUaACUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 16435 0.69 0.896334
Target:  5'- cGCUcGAGCUCGGcgGACgCguaagauuuuacgugCCGGCCGGg -3'
miRNA:   3'- -CGAaCUUGAGCUaaCUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 55912 0.68 0.924051
Target:  5'- gGCUcGGGCUCGGgcucgGGCUCgGGCuCGAg -3'
miRNA:   3'- -CGAaCUUGAGCUaa---CUGGGgCCG-GCU- -5'
8039 3' -53.6 NC_001973.1 + 72207 0.68 0.936493
Target:  5'- -gUUGAGCUCGGcgGACgCguaagauuuuacgugCCGGCCGGg -3'
miRNA:   3'- cgAACUUGAGCUaaCUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 75008 0.67 0.944018
Target:  5'- cGCUucaUGuACUCGAgcgUGACCUucacgcggCGGUCGAa -3'
miRNA:   3'- -CGA---ACuUGAGCUa--ACUGGG--------GCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 67784 0.67 0.947983
Target:  5'- gGCUguUGAACUUGAcggagaaUUGGCCggUGGCCGGg -3'
miRNA:   3'- -CGA--ACUUGAGCU-------AACUGGg-GCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 133262 0.67 0.952571
Target:  5'- gGCguccAGCUCGGccucGGCCgCGGCCGAg -3'
miRNA:   3'- -CGaac-UUGAGCUaa--CUGGgGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 58023 0.67 0.956499
Target:  5'- -aUUGAaccGCUCGAUcucgGGCUCCGGCgGc -3'
miRNA:   3'- cgAACU---UGAGCUAa---CUGGGGCCGgCu -5'
8039 3' -53.6 NC_001973.1 + 2673 0.67 0.960199
Target:  5'- cGCccGAGCUCGAg----CUCGGCCGAc -3'
miRNA:   3'- -CGaaCUUGAGCUaacugGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 115061 0.66 0.963676
Target:  5'- ---cGAGCUCGAgcaaacccGAUUCCGGCCu- -3'
miRNA:   3'- cgaaCUUGAGCUaa------CUGGGGCCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.