Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8039 | 3' | -53.6 | NC_001973.1 | + | 2673 | 0.67 | 0.960199 |
Target: 5'- cGCccGAGCUCGAg----CUCGGCCGAc -3' miRNA: 3'- -CGaaCUUGAGCUaacugGGGCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 12423 | 0.7 | 0.868236 |
Target: 5'- aCUUGAGCUCGGcUGACgCguaggauuuuacgcgUCGGCCGGg -3' miRNA: 3'- cGAACUUGAGCUaACUG-G---------------GGCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 16435 | 0.69 | 0.896334 |
Target: 5'- cGCUcGAGCUCGGcgGACgCguaagauuuuacgugCCGGCCGGg -3' miRNA: 3'- -CGAaCUUGAGCUaaCUG-G---------------GGCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 18331 | 0.66 | 0.975464 |
Target: 5'- uCUUGG--UCGGaUGGCCgCCGGCCa- -3' miRNA: 3'- cGAACUugAGCUaACUGG-GGCCGGcu -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 21156 | 0.66 | 0.976466 |
Target: 5'- cGCUcGAGCUCGGcgGACgCguaggauuuuacgcgUCGGCCGGg -3' miRNA: 3'- -CGAaCUUGAGCUaaCUG-G---------------GGCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 40907 | 0.78 | 0.461698 |
Target: 5'- aUUUGAACUCGA-UGACCCUaGCCGGc -3' miRNA: 3'- cGAACUUGAGCUaACUGGGGcCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 40985 | 0.82 | 0.277877 |
Target: 5'- aUUUGAACUCGAUUGACCCUuGCCa- -3' miRNA: 3'- cGAACUUGAGCUAACUGGGGcCGGcu -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 41063 | 0.92 | 0.067554 |
Target: 5'- gGCUUGAACcCGAUcGACCCCGGCCGGc -3' miRNA: 3'- -CGAACUUGaGCUAaCUGGGGCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 42148 | 0.66 | 0.963676 |
Target: 5'- cGCgacUGuuACUCGAguugUGGCCgCCGGUgGAu -3' miRNA: 3'- -CGa--ACu-UGAGCUa---ACUGG-GGCCGgCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 55912 | 0.68 | 0.924051 |
Target: 5'- gGCUcGGGCUCGGgcucgGGCUCgGGCuCGAg -3' miRNA: 3'- -CGAaCUUGAGCUaa---CUGGGgCCG-GCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 58023 | 0.67 | 0.956499 |
Target: 5'- -aUUGAaccGCUCGAUcucgGGCUCCGGCgGc -3' miRNA: 3'- cgAACU---UGAGCUAa---CUGGGGCCGgCu -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 62917 | 0.66 | 0.966935 |
Target: 5'- aGCacGAGCgcCGAUUcGACUCgGGCCGGc -3' miRNA: 3'- -CGaaCUUGa-GCUAA-CUGGGgCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 67784 | 0.67 | 0.947983 |
Target: 5'- gGCUguUGAACUUGAcggagaaUUGGCCggUGGCCGGg -3' miRNA: 3'- -CGA--ACUUGAGCU-------AACUGGg-GCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 72207 | 0.68 | 0.936493 |
Target: 5'- -gUUGAGCUCGGcgGACgCguaagauuuuacgugCCGGCCGGg -3' miRNA: 3'- cgAACUUGAGCUaaCUG-G---------------GGCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 75008 | 0.67 | 0.944018 |
Target: 5'- cGCUucaUGuACUCGAgcgUGACCUucacgcggCGGUCGAa -3' miRNA: 3'- -CGA---ACuUGAGCUa--ACUGGG--------GCCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 108939 | 0.66 | 0.963676 |
Target: 5'- uGCUcgcGAACUCGAgcaaggcgcACCCgGGCCGc -3' miRNA: 3'- -CGAa--CUUGAGCUaac------UGGGgCCGGCu -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 114565 | 0.84 | 0.223632 |
Target: 5'- gGCUUGAACUCuGUUGACCCUuGCCGGc -3' miRNA: 3'- -CGAACUUGAGcUAACUGGGGcCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 114722 | 0.9 | 0.098285 |
Target: 5'- gGUUUGAACUCGAUUGACCCUuGCCGGc -3' miRNA: 3'- -CGAACUUGAGCUAACUGGGGcCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 114875 | 0.76 | 0.529157 |
Target: 5'- gGCUUGAACUCuGUUaACCCCuGCCGGc -3' miRNA: 3'- -CGAACUUGAGcUAAcUGGGGcCGGCU- -5' |
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8039 | 3' | -53.6 | NC_001973.1 | + | 114953 | 0.78 | 0.443257 |
Target: 5'- gGCUUGAACUCuGUUaACCCCuGCCGAc -3' miRNA: 3'- -CGAACUUGAGcUAAcUGGGGcCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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