miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 5' -60.8 NC_001973.1 + 45158 0.67 0.620832
Target:  5'- cGUCC-ACGgGCgCGCCGAGCagccggUCGAacaGCa -3'
miRNA:   3'- -UAGGaUGCgCGgGCGGCUCG------AGCU---CG- -5'
8039 5' -60.8 NC_001973.1 + 45349 0.68 0.611921
Target:  5'- uUCCggggcACGCuGCUCGUCGugcaguagccgccuuGCUCGAGCa -3'
miRNA:   3'- uAGGa----UGCG-CGGGCGGCu--------------CGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 160407 0.68 0.610931
Target:  5'- gAUUUUACGCGUCgGCCGGuGUcgaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCU-CG---AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 119450 0.68 0.610931
Target:  5'- -aUCgcCGCGCCCGCCGccgccgccGC-CGAGCc -3'
miRNA:   3'- uaGGauGCGCGGGCGGCu-------CGaGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 71960 0.68 0.610931
Target:  5'- gAUCUUACGCGUCgGCgaGGGUcaaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGg-CUCG---AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 110201 0.68 0.610931
Target:  5'- --aCUACaCGCCCGCgcaGAGCgccucgcuggUCGAGCa -3'
miRNA:   3'- uagGAUGcGCGGGCGg--CUCG----------AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 52695 0.68 0.604998
Target:  5'- --aCUGCGacccgaaaucguaguCGagCCGCCGcAGCUCGAGCg -3'
miRNA:   3'- uagGAUGC---------------GCg-GGCGGC-UCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 112970 0.68 0.601045
Target:  5'- -cUCUGgGCGUUCGCCGAGaccgcCUCGuAGCa -3'
miRNA:   3'- uaGGAUgCGCGGGCGGCUC-----GAGC-UCG- -5'
8039 5' -60.8 NC_001973.1 + 8438 0.68 0.601045
Target:  5'- cGUCgU-CGCGCCCGUCGAcgaaccGCUCGccgaccacGGCa -3'
miRNA:   3'- -UAGgAuGCGCGGGCGGCU------CGAGC--------UCG- -5'
8039 5' -60.8 NC_001973.1 + 72385 0.68 0.591181
Target:  5'- gAUUUUACGCGCCCGCUaGGGUcaacaGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGG-CUCGag---CUCG- -5'
8039 5' -60.8 NC_001973.1 + 21481 0.68 0.581345
Target:  5'- -aCCUcggugaGCGCgucgcgGCCCGCCGA-CUCGAGg -3'
miRNA:   3'- uaGGA------UGCG------CGGGCGGCUcGAGCUCg -5'
8039 5' -60.8 NC_001973.1 + 31981 0.68 0.571543
Target:  5'- --gCUGCGCGCcgaucuCCGCCGcGCUCaGGCc -3'
miRNA:   3'- uagGAUGCGCG------GGCGGCuCGAGcUCG- -5'
8039 5' -60.8 NC_001973.1 + 46540 0.68 0.570565
Target:  5'- -gCCUcgcaacaGCGCcgaccgGCCCGUCGuGCUCGAGg -3'
miRNA:   3'- uaGGA-------UGCG------CGGGCGGCuCGAGCUCg -5'
8039 5' -60.8 NC_001973.1 + 52799 0.69 0.552065
Target:  5'- -cUCUGCGCGgCgaacUCGGGCUCGAGCg -3'
miRNA:   3'- uaGGAUGCGCgGgc--GGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 160819 0.69 0.552065
Target:  5'- gAUUUUACGCGUCgGCCGgAGUcgaucaucgaggUCGAGCc -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGC-UCG------------AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 141449 0.69 0.542401
Target:  5'- cGUUCUACGUGCCgCGCgaCGGGCUgGuGGCc -3'
miRNA:   3'- -UAGGAUGCGCGG-GCG--GCUCGAgC-UCG- -5'
8039 5' -60.8 NC_001973.1 + 82909 0.69 0.542401
Target:  5'- -gCCgcCGCGCCCGaCCGAcgcGUUCGGcGCg -3'
miRNA:   3'- uaGGauGCGCGGGC-GGCU---CGAGCU-CG- -5'
8039 5' -60.8 NC_001973.1 + 53397 0.69 0.542401
Target:  5'- cUCCU---CGCCCGCCG-GCaCGGGCg -3'
miRNA:   3'- uAGGAugcGCGGGCGGCuCGaGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 115385 0.69 0.542401
Target:  5'- ----gACGCGaCCCGCCG-GCU-GAGCg -3'
miRNA:   3'- uaggaUGCGC-GGGCGGCuCGAgCUCG- -5'
8039 5' -60.8 NC_001973.1 + 12211 0.69 0.532793
Target:  5'- gAUUUUACGUGCCgGCCaGGGUcgaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGG-CUCG---AGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.