miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 5' -60.8 NC_001973.1 + 114677 1.05 0.001974
Target:  5'- aAUCCUACGCGCCCGCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 114831 1.01 0.003973
Target:  5'- gAUCCUACGCGUCCGCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 41097 1.01 0.003973
Target:  5'- gAUCCUACGCGUCCGCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 40939 1.01 0.003973
Target:  5'- gAUCCUACGCGUCCGCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 40861 1.01 0.004081
Target:  5'- aAUCCUACGCGUCCGCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 114987 0.96 0.008427
Target:  5'- aAUCUUACGCGUCCGCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 41018 0.88 0.033766
Target:  5'- aAUCUUACGCGUCCGCCGAGCUCaguuugGGGCa -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAG------CUCG- -5'
8039 5' -60.8 NC_001973.1 + 114599 0.87 0.040629
Target:  5'- aAUCUUACGCGUCCGCCGAGCUCaAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCGAGcUCG- -5'
8039 5' -60.8 NC_001973.1 + 114909 0.86 0.043972
Target:  5'- aAUCUUACGCGUCCaCCGAGCUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGcGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 151087 0.86 0.045146
Target:  5'- gAUCCUACGCGCCCGCCGGGgUCGuuugaGGUu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGCUCgAGC-----UCG- -5'
8039 5' -60.8 NC_001973.1 + 115049 0.86 0.046349
Target:  5'- -cCCg--GCGUCCGCCGAGCUCGAGCa -3'
miRNA:   3'- uaGGaugCGCGGGCGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 150920 0.85 0.050681
Target:  5'- gAUCCUACGCGUCCGCCGgggucguuggaggucAGaCUCGAGCu -3'
miRNA:   3'- -UAGGAUGCGCGGGCGGC---------------UC-GAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 19709 0.8 0.109036
Target:  5'- aAUCCUACGCGUCgGCCGgAGCUCuaGAGUa -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGC-UCGAG--CUCG- -5'
8039 5' -60.8 NC_001973.1 + 119169 0.8 0.114712
Target:  5'- aGUCCaucgACGCGCCCGUCGAGC-CGAcGCc -3'
miRNA:   3'- -UAGGa---UGCGCGGGCGGCUCGaGCU-CG- -5'
8039 5' -60.8 NC_001973.1 + 7094 0.79 0.136816
Target:  5'- aGUCCggcGCGCGCgaCCGCCGucguGCUCGAGUg -3'
miRNA:   3'- -UAGGa--UGCGCG--GGCGGCu---CGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 51447 0.77 0.170967
Target:  5'- uUCCUAgGCcgcgaGCCCgGgCGAGCUCGAGCg -3'
miRNA:   3'- uAGGAUgCG-----CGGG-CgGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 58008 0.77 0.188466
Target:  5'- cUCCUGCGCGCCCacauugaaccGCuCGAuCUCGGGCu -3'
miRNA:   3'- uAGGAUGCGCGGG----------CG-GCUcGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 5428 0.76 0.207521
Target:  5'- -aCUUGauCGCGUCCaaggaGCCGAGCUCGGGCa -3'
miRNA:   3'- uaGGAU--GCGCGGG-----CGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 60412 0.76 0.212031
Target:  5'- gAUCUUgcagcggGCGCGCUCGCUGgaucAGCUCGAGCc -3'
miRNA:   3'- -UAGGA-------UGCGCGGGCGGC----UCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 45629 0.76 0.212538
Target:  5'- gGUCC-ACGCGCUCGUCGAGCgCG-GCg -3'
miRNA:   3'- -UAGGaUGCGCGGGCGGCUCGaGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.