miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 5' -60.8 NC_001973.1 + 2703 0.74 0.268614
Target:  5'- aAUCUUACGCGUCgGCCGGGgUCGAu- -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCUCgAGCUcg -5'
8039 5' -60.8 NC_001973.1 + 2821 0.7 0.467513
Target:  5'- gAUUUUACGCGUCgGCCGGGgUCGAu- -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCUCgAGCUcg -5'
8039 5' -60.8 NC_001973.1 + 3189 0.76 0.222885
Target:  5'- -gCCgcucCGCGCUCGCC-AGCUCGGGCu -3'
miRNA:   3'- uaGGau--GCGCGGGCGGcUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 4224 0.74 0.274834
Target:  5'- ----gGCGCGCCUGCCGGcGCUCGuuuGCg -3'
miRNA:   3'- uaggaUGCGCGGGCGGCU-CGAGCu--CG- -5'
8039 5' -60.8 NC_001973.1 + 5428 0.76 0.207521
Target:  5'- -aCUUGauCGCGUCCaaggaGCCGAGCUCGGGCa -3'
miRNA:   3'- uaGGAU--GCGCGGG-----CGGCUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 6432 0.69 0.504358
Target:  5'- -gCCgacgaGCGCGCCCgucgccggaGCCGuGCUCGcGCg -3'
miRNA:   3'- uaGGa----UGCGCGGG---------CGGCuCGAGCuCG- -5'
8039 5' -60.8 NC_001973.1 + 7066 0.75 0.244864
Target:  5'- --gCUGCGCGCCCugGUCGAGCgCGAGUu -3'
miRNA:   3'- uagGAUGCGCGGG--CGGCUCGaGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 7094 0.79 0.136816
Target:  5'- aGUCCggcGCGCGCgaCCGCCGucguGCUCGAGUg -3'
miRNA:   3'- -UAGGa--UGCGCG--GGCGGCu---CGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 7848 0.72 0.390133
Target:  5'- --gCgcCGCGCCCGUCGAGCUgGcGCg -3'
miRNA:   3'- uagGauGCGCGGGCGGCUCGAgCuCG- -5'
8039 5' -60.8 NC_001973.1 + 8438 0.68 0.601045
Target:  5'- cGUCgU-CGCGCCCGUCGAcgaaccGCUCGccgaccacGGCa -3'
miRNA:   3'- -UAGgAuGCGCGGGCGGCU------CGAGC--------UCG- -5'
8039 5' -60.8 NC_001973.1 + 9081 0.7 0.458519
Target:  5'- -gCCUGuCGCGCCgCG-UGAGCUCGGcGCg -3'
miRNA:   3'- uaGGAU-GCGCGG-GCgGCUCGAGCU-CG- -5'
8039 5' -60.8 NC_001973.1 + 9843 0.67 0.670312
Target:  5'- uUCCUcGCGCGCCCagaagcguuuGUauaaGAGCUCGuucAGCc -3'
miRNA:   3'- uAGGA-UGCGCGGG----------CGg---CUCGAGC---UCG- -5'
8039 5' -60.8 NC_001973.1 + 12133 0.75 0.239206
Target:  5'- gAUUUUACGCGUCUGCCggggucaaucGAGUUCGAGCc -3'
miRNA:   3'- -UAGGAUGCGCGGGCGG----------CUCGAGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 12211 0.69 0.532793
Target:  5'- gAUUUUACGUGCCgGCCaGGGUcgaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGG-CUCG---AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 12289 0.69 0.532793
Target:  5'- gAUUUUACGUGCCgGCCaGGGUcaaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGG-CUCG---AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 12446 0.7 0.449617
Target:  5'- gAUUUUACGCGUCgGCCGGGgucgaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCUCg----AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 16459 0.72 0.382064
Target:  5'- gAUUUUACGUGCCgGCCGGGgucaaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCUCg----AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 19709 0.8 0.109036
Target:  5'- aAUCCUACGCGUCgGCCGgAGCUCuaGAGUa -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGC-UCGAG--CUCG- -5'
8039 5' -60.8 NC_001973.1 + 21082 0.75 0.250633
Target:  5'- gAUCUUACGCGUCgGCCGGGgucaaUCGAGUu -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCUCg----AGCUCG- -5'
8039 5' -60.8 NC_001973.1 + 21180 0.7 0.467513
Target:  5'- gAUUUUACGCGUCgGCCGGGgUCGAu- -3'
miRNA:   3'- -UAGGAUGCGCGGgCGGCUCgAGCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.