miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8051 3' -55.3 NC_001973.1 + 65766 0.72 0.609227
Target:  5'- gUUGAcgauGCGcaugcugacGCCCGACGCGUucguAGCCUCc -3'
miRNA:   3'- aAACU----CGC---------CGGGCUGCGCAu---UUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 66931 0.67 0.866152
Target:  5'- ---cAGCGGCCaGACGCGUcucAACCa- -3'
miRNA:   3'- aaacUCGCCGGgCUGCGCAu--UUGGag -5'
8051 3' -55.3 NC_001973.1 + 73820 0.67 0.873629
Target:  5'- ---cGGUGcGCCCGACGaaGgcGACCUCg -3'
miRNA:   3'- aaacUCGC-CGGGCUGCg-CauUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 76470 0.67 0.858459
Target:  5'- -aUGGGCGGCUCGGCG-GU--GCC-Cg -3'
miRNA:   3'- aaACUCGCCGGGCUGCgCAuuUGGaG- -5'
8051 3' -55.3 NC_001973.1 + 80462 0.71 0.671342
Target:  5'- ---cGGCGGUCCGGCGCcagcucGGCCUCg -3'
miRNA:   3'- aaacUCGCCGGGCUGCGcau---UUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 96049 0.67 0.887913
Target:  5'- -cUGGGCGGUCUGuuCGCGUGGGagaUCg -3'
miRNA:   3'- aaACUCGCCGGGCu-GCGCAUUUgg-AG- -5'
8051 3' -55.3 NC_001973.1 + 103711 0.66 0.901271
Target:  5'- --aGAGaugcCGGCCCgGGCGCGgcGACUguUCa -3'
miRNA:   3'- aaaCUC----GCCGGG-CUGCGCauUUGG--AG- -5'
8051 3' -55.3 NC_001973.1 + 105483 0.7 0.742158
Target:  5'- -aUGAuGUGGCCgGGCGCGUu-GCCg- -3'
miRNA:   3'- aaACU-CGCCGGgCUGCGCAuuUGGag -5'
8051 3' -55.3 NC_001973.1 + 108529 0.67 0.873629
Target:  5'- -cUGAacGCGGCCCGAgGCGacAACgaaCUCg -3'
miRNA:   3'- aaACU--CGCCGGGCUgCGCauUUG---GAG- -5'
8051 3' -55.3 NC_001973.1 + 110862 0.66 0.919512
Target:  5'- -gUGuacGCGuG-CCGGCGCGcGGACCUCg -3'
miRNA:   3'- aaACu--CGC-CgGGCUGCGCaUUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 111294 0.72 0.629947
Target:  5'- -gUG-GUGGCgCCG-CGCGUGAugCUCa -3'
miRNA:   3'- aaACuCGCCG-GGCuGCGCAUUugGAG- -5'
8051 3' -55.3 NC_001973.1 + 117505 0.69 0.789972
Target:  5'- cUUUG-GCcGCCggCGGCGCGUAGACUUCc -3'
miRNA:   3'- -AAACuCGcCGG--GCUGCGCAUUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 121474 0.66 0.919512
Target:  5'- -aUGGGCGcGCCCGGCcaaaCGcGAGCCg- -3'
miRNA:   3'- aaACUCGC-CGGGCUGc---GCaUUUGGag -5'
8051 3' -55.3 NC_001973.1 + 121548 0.68 0.83998
Target:  5'- --cGAGCGGCgUCGGCGCGUGugguggaacacguaCUCg -3'
miRNA:   3'- aaaCUCGCCG-GGCUGCGCAUuug-----------GAG- -5'
8051 3' -55.3 NC_001973.1 + 122619 0.7 0.722275
Target:  5'- ---cGGCGGCgCCGACGCGggcGCCg- -3'
miRNA:   3'- aaacUCGCCG-GGCUGCGCauuUGGag -5'
8051 3' -55.3 NC_001973.1 + 125635 0.67 0.89471
Target:  5'- aUUUGGGCGGgCCGuuCGgGUcgAGGCCUg -3'
miRNA:   3'- -AAACUCGCCgGGCu-GCgCA--UUUGGAg -5'
8051 3' -55.3 NC_001973.1 + 126045 0.67 0.89471
Target:  5'- aUUUGAGCucugCCGACGCGUaAGACCg- -3'
miRNA:   3'- -AAACUCGccg-GGCUGCGCA-UUUGGag -5'
8051 3' -55.3 NC_001973.1 + 126099 0.75 0.441191
Target:  5'- --aGAGCGuG-CCGACGCGUGAGCC-Cg -3'
miRNA:   3'- aaaCUCGC-CgGGCUGCGCAUUUGGaG- -5'
8051 3' -55.3 NC_001973.1 + 126630 0.66 0.930453
Target:  5'- -cUGAGCGGUuucUCuGCGCGc-GGCCUCg -3'
miRNA:   3'- aaACUCGCCG---GGcUGCGCauUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 132279 0.75 0.441191
Target:  5'- --aGGGCuGGCCgUGACGCGUGcGGCCUCu -3'
miRNA:   3'- aaaCUCG-CCGG-GCUGCGCAU-UUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.