Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8051 | 3' | -55.3 | NC_001973.1 | + | 2683 | 0.66 | 0.901271 |
Target: 5'- --cGAGCucGG-CCGACGCGUaAAAUCUUa -3' miRNA: 3'- aaaCUCG--CCgGGCUGCGCA-UUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 4249 | 0.69 | 0.789972 |
Target: 5'- -gUGAGCGGCgCGuACGCGaacAGCCg- -3' miRNA: 3'- aaACUCGCCGgGC-UGCGCau-UUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 4315 | 0.66 | 0.907593 |
Target: 5'- -aUGAGCGcGCCCagccCGCGcucgacGACCUCu -3' miRNA: 3'- aaACUCGC-CGGGcu--GCGCau----UUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 6437 | 0.68 | 0.834148 |
Target: 5'- --cGAGCGcGCCCGuCGCcgGAGCCg- -3' miRNA: 3'- aaaCUCGC-CGGGCuGCGcaUUUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 7125 | 0.67 | 0.873629 |
Target: 5'- --aGuGCGGCCuguuuuucucgCGACGCG---GCCUCa -3' miRNA: 3'- aaaCuCGCCGG-----------GCUGCGCauuUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 10711 | 0.67 | 0.89471 |
Target: 5'- --cGGGCGGCUCGAUgaGCGgc-ACCgUCg -3' miRNA: 3'- aaaCUCGCCGGGCUG--CGCauuUGG-AG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 19034 | 0.68 | 0.833307 |
Target: 5'- -cUGAGCGGCgaGACGCucgaGUuccgcucGGACCUCc -3' miRNA: 3'- aaACUCGCCGggCUGCG----CA-------UUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 22612 | 0.66 | 0.901271 |
Target: 5'- --cGGGcCGGCCCGACGauuucgaGUGcGACCa- -3' miRNA: 3'- aaaCUC-GCCGGGCUGCg------CAU-UUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 23724 | 0.66 | 0.901271 |
Target: 5'- -cUGGGCucgcugacgGGCCCGACGgCGaccgcgcccGGCCUCa -3' miRNA: 3'- aaACUCG---------CCGGGCUGC-GCau-------UUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 24180 | 0.71 | 0.650675 |
Target: 5'- ----uGCGGCCgCGGCGCGUcAGCgUCa -3' miRNA: 3'- aaacuCGCCGG-GCUGCGCAuUUGgAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 25642 | 0.66 | 0.919512 |
Target: 5'- --aGGGCGcGCgUCGACGCGgagccgAAGCCgUCg -3' miRNA: 3'- aaaCUCGC-CG-GGCUGCGCa-----UUUGG-AG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 28293 | 0.67 | 0.89471 |
Target: 5'- -gUG-GCGGCCgagCGcCGCGUcggcgcAAACCUCg -3' miRNA: 3'- aaACuCGCCGG---GCuGCGCA------UUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 30387 | 0.66 | 0.925105 |
Target: 5'- --gGuGCGGgCCGGCGCGgcGGCg-- -3' miRNA: 3'- aaaCuCGCCgGGCUGCGCauUUGgag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 34985 | 0.71 | 0.671342 |
Target: 5'- -gUGuGCGuGCCCG-CGCGUuu-CCUCg -3' miRNA: 3'- aaACuCGC-CGGGCuGCGCAuuuGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 36327 | 0.72 | 0.629947 |
Target: 5'- --cGAcGCGG-CCGACGCGg--GCCUCg -3' miRNA: 3'- aaaCU-CGCCgGGCUGCGCauuUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 37900 | 0.67 | 0.858459 |
Target: 5'- --gGAGgGcGCCgGGCGCGgcAagacGCCUCg -3' miRNA: 3'- aaaCUCgC-CGGgCUGCGCauU----UGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 55851 | 0.67 | 0.880885 |
Target: 5'- --cGAGCGcGCCCGcaACGgCGgccGAACCUUu -3' miRNA: 3'- aaaCUCGC-CGGGC--UGC-GCa--UUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 59009 | 0.72 | 0.640315 |
Target: 5'- --cGAGCGGCgCCGACGUGUucuuuuCCg- -3' miRNA: 3'- aaaCUCGCCG-GGCUGCGCAuuu---GGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 61171 | 0.67 | 0.866152 |
Target: 5'- --cGGGCGGUcgCCGACGCu----CCUCg -3' miRNA: 3'- aaaCUCGCCG--GGCUGCGcauuuGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 63959 | 0.7 | 0.712209 |
Target: 5'- ---cGGCGGCUCGGCaaCGUGAACCUg -3' miRNA: 3'- aaacUCGCCGGGCUGc-GCAUUUGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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