Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8051 | 3' | -55.3 | NC_001973.1 | + | 132279 | 0.75 | 0.441191 |
Target: 5'- --aGGGCuGGCCgUGACGCGUGcGGCCUCu -3' miRNA: 3'- aaaCUCG-CCGG-GCUGCGCAU-UUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 126099 | 0.75 | 0.441191 |
Target: 5'- --aGAGCGuG-CCGACGCGUGAGCC-Cg -3' miRNA: 3'- aaaCUCGC-CgGGCUGCGCAUUUGGaG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 151313 | 0.73 | 0.568054 |
Target: 5'- -aUGAGCGGgCgGACGUGUAgGACCgUCa -3' miRNA: 3'- aaACUCGCCgGgCUGCGCAU-UUGG-AG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 133671 | 0.73 | 0.587546 |
Target: 5'- -aUGAGCGaGCgcccgaaCCGGCGacaGUAGGCCUCg -3' miRNA: 3'- aaACUCGC-CG-------GGCUGCg--CAUUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 65766 | 0.72 | 0.609227 |
Target: 5'- gUUGAcgauGCGcaugcugacGCCCGACGCGUucguAGCCUCc -3' miRNA: 3'- aAACU----CGC---------CGGGCUGCGCAu---UUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 111294 | 0.72 | 0.629947 |
Target: 5'- -gUG-GUGGCgCCG-CGCGUGAugCUCa -3' miRNA: 3'- aaACuCGCCG-GGCuGCGCAUUugGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 36327 | 0.72 | 0.629947 |
Target: 5'- --cGAcGCGG-CCGACGCGg--GCCUCg -3' miRNA: 3'- aaaCU-CGCCgGGCUGCGCauuUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 59009 | 0.72 | 0.640315 |
Target: 5'- --cGAGCGGCgCCGACGUGUucuuuuCCg- -3' miRNA: 3'- aaaCUCGCCG-GGCUGCGCAuuu---GGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 24180 | 0.71 | 0.650675 |
Target: 5'- ----uGCGGCCgCGGCGCGUcAGCgUCa -3' miRNA: 3'- aaacuCGCCGG-GCUGCGCAuUUGgAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 80462 | 0.71 | 0.671342 |
Target: 5'- ---cGGCGGUCCGGCGCcagcucGGCCUCg -3' miRNA: 3'- aaacUCGCCGGGCUGCGcau---UUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 34985 | 0.71 | 0.671342 |
Target: 5'- -gUGuGCGuGCCCG-CGCGUuu-CCUCg -3' miRNA: 3'- aaACuCGC-CGGGCuGCGCAuuuGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 63959 | 0.7 | 0.712209 |
Target: 5'- ---cGGCGGCUCGGCaaCGUGAACCUg -3' miRNA: 3'- aaacUCGCCGGGCUGc-GCAUUUGGAg -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 122619 | 0.7 | 0.722275 |
Target: 5'- ---cGGCGGCgCCGACGCGggcGCCg- -3' miRNA: 3'- aaacUCGCCG-GGCUGCGCauuUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 105483 | 0.7 | 0.742158 |
Target: 5'- -aUGAuGUGGCCgGGCGCGUu-GCCg- -3' miRNA: 3'- aaACU-CGCCGGgCUGCGCAuuUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 117505 | 0.69 | 0.789972 |
Target: 5'- cUUUG-GCcGCCggCGGCGCGUAGACUUCc -3' miRNA: 3'- -AAACuCGcCGG--GCUGCGCAUUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 4249 | 0.69 | 0.789972 |
Target: 5'- -gUGAGCGGCgCGuACGCGaacAGCCg- -3' miRNA: 3'- aaACUCGCCGgGC-UGCGCau-UUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 133304 | 0.68 | 0.816985 |
Target: 5'- ---cGGCGGCgCCGucGCGCGgcgAAACUUCa -3' miRNA: 3'- aaacUCGCCG-GGC--UGCGCa--UUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 19034 | 0.68 | 0.833307 |
Target: 5'- -cUGAGCGGCgaGACGCucgaGUuccgcucGGACCUCc -3' miRNA: 3'- aaACUCGCCGggCUGCG----CA-------UUUGGAG- -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 6437 | 0.68 | 0.834148 |
Target: 5'- --cGAGCGcGCCCGuCGCcgGAGCCg- -3' miRNA: 3'- aaaCUCGC-CGGGCuGCGcaUUUGGag -5' |
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8051 | 3' | -55.3 | NC_001973.1 | + | 121548 | 0.68 | 0.83998 |
Target: 5'- --cGAGCGGCgUCGGCGCGUGugguggaacacguaCUCg -3' miRNA: 3'- aaaCUCGCCG-GGCUGCGCAUuug-----------GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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