miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 3' -54.4 NC_001973.1 + 41016 0.89 0.064807
Target:  5'- aAAAUCUUACGCGUCcGCCGAGCUCAGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 41095 0.95 0.02791
Target:  5'- aAGAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 41421 0.71 0.694012
Target:  5'- ---gCCUcCGCGUCGGCCGAcagGCUCc- -3'
miRNA:   3'- uuuaGGAuGCGCAGUCGGCU---CGAGuu -5'
8052 3' -54.4 NC_001973.1 + 58963 0.66 0.934367
Target:  5'- --uUCCUGCGCGUguacuuggaCGgcGCCGAGCaCAAg -3'
miRNA:   3'- uuuAGGAUGCGCA---------GU--CGGCUCGaGUU- -5'
8052 3' -54.4 NC_001973.1 + 69549 0.66 0.917819
Target:  5'- gGAGUCgaGCGCGacgUAGCCGucGCUCGg -3'
miRNA:   3'- -UUUAGgaUGCGCa--GUCGGCu-CGAGUu -5'
8052 3' -54.4 NC_001973.1 + 71958 0.78 0.312985
Target:  5'- aAGAUCUUACGCGUCGGCgagggucaauCGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72045 0.73 0.557458
Target:  5'- aAGAUUUUACGCGUCGGCgagggucaauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72140 0.78 0.320459
Target:  5'- aGGAUCUUACGCGUCGGCaaaggucgauCGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72227 0.71 0.6731
Target:  5'- aAGAUUUUACGUGcCGGCCGGGgUCAAu -3'
miRNA:   3'- -UUUAGGAUGCGCaGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72488 0.81 0.222064
Target:  5'- aAAAUCUUACGCGUCGGCCGGGUcgCGg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCGa-GUu -5'
8052 3' -54.4 NC_001973.1 + 83820 0.68 0.870455
Target:  5'- ---gCC-GCGCG-CGGCgGAGCUCGAa -3'
miRNA:   3'- uuuaGGaUGCGCaGUCGgCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 83872 0.7 0.735094
Target:  5'- ---gCCcGCGCG-CGGCgCGAGCUCAGg -3'
miRNA:   3'- uuuaGGaUGCGCaGUCG-GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114430 0.68 0.862738
Target:  5'- ---gCCUGCGCGcgAGCCG-GCUCGc -3'
miRNA:   3'- uuuaGGAUGCGCagUCGGCuCGAGUu -5'
8052 3' -54.4 NC_001973.1 + 114597 0.9 0.056387
Target:  5'- aAAAUCUUACGCGUCcGCCGAGCUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114675 0.87 0.092743
Target:  5'- aAAAUCCUACGCGcCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCaGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114753 0.76 0.411322
Target:  5'- uAAAUCUUACGCGUCcG-CGAGCUCAGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCgGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114829 0.95 0.02791
Target:  5'- aAGAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114907 0.81 0.227735
Target:  5'- aAAAUCUUACGCGUCcaCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGucGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114985 0.9 0.061303
Target:  5'- aAAAUCUUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 115049 0.7 0.745151
Target:  5'- ---cCCg--GCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- uuuaGGaugCGCAGuCGGCUCGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.