miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 3' -54.4 NC_001973.1 + 2529 0.66 0.911794
Target:  5'- -uGUCCUGCGCGaacucgaccUCGGCCauuuuGAGUUUAAu -3'
miRNA:   3'- uuUAGGAUGCGC---------AGUCGG-----CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 2701 0.87 0.095312
Target:  5'- aAAAUCUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 2819 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 4737 0.7 0.764939
Target:  5'- cAAGUCgaACGCGUCGGCCGucaccAGUUCu- -3'
miRNA:   3'- -UUUAGgaUGCGCAGUCGGC-----UCGAGuu -5'
8052 3' -54.4 NC_001973.1 + 5268 0.68 0.846646
Target:  5'- cGAUCgUAaCGCGUCAGCaaauAGCUCAGc -3'
miRNA:   3'- uUUAGgAU-GCGCAGUCGgc--UCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 5428 0.69 0.820972
Target:  5'- ---aCUUGauCGCGUCcaaggAGCCGAGCUCGGg -3'
miRNA:   3'- uuuaGGAU--GCGCAG-----UCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12131 0.77 0.393649
Target:  5'- aGGAUUUUACGCGUCuGCCGGGgUCAAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12366 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCaagggucaauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12444 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12506 0.77 0.35168
Target:  5'- gGAggUUUACGCGUCGGCCG-GCUCAAa -3'
miRNA:   3'- -UUuaGGAUGCGCAGUCGGCuCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 16379 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 16457 0.71 0.6731
Target:  5'- aAGAUUUUACGUGcCGGCCGGGgUCAAu -3'
miRNA:   3'- -UUUAGGAUGCGCaGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 16535 0.73 0.557458
Target:  5'- aAGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 19707 0.91 0.051855
Target:  5'- aAAAUCCUACGCGUCGGCCGgAGCUCu- -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGC-UCGAGuu -5'
8052 3' -54.4 NC_001973.1 + 20981 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCuagggucaauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 21080 0.87 0.0878
Target:  5'- aGGAUCUUACGCGUCGGCCGGGgUCAAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 21178 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 30081 0.68 0.838285
Target:  5'- ---cCCUGCGCGcccaaCAGCCGcucaucucGGCUCGAa -3'
miRNA:   3'- uuuaGGAUGCGCa----GUCGGC--------UCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 40859 0.95 0.028711
Target:  5'- aAAAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 40937 0.95 0.02791
Target:  5'- aAGAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.