miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 3' -54.4 NC_001973.1 + 114829 0.95 0.02791
Target:  5'- aAGAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 40937 0.95 0.02791
Target:  5'- aAGAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 41095 0.95 0.02791
Target:  5'- aAGAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 40859 0.95 0.028711
Target:  5'- aAAAUCCUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 19707 0.91 0.051855
Target:  5'- aAAAUCCUACGCGUCGGCCGgAGCUCu- -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGC-UCGAGuu -5'
8052 3' -54.4 NC_001973.1 + 114597 0.9 0.056387
Target:  5'- aAAAUCUUACGCGUCcGCCGAGCUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114985 0.9 0.061303
Target:  5'- aAAAUCUUACGCGUCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 150976 0.9 0.061303
Target:  5'- aAAAUCCUACGCGUCGGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 41016 0.89 0.064807
Target:  5'- aAAAUCUUACGCGUCcGCCGAGCUCAGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 21080 0.87 0.0878
Target:  5'- aGGAUCUUACGCGUCGGCCGGGgUCAAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114675 0.87 0.092743
Target:  5'- aAAAUCCUACGCGcCcGCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCaGuCGGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 2701 0.87 0.095312
Target:  5'- aAAAUCUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 151370 0.85 0.128361
Target:  5'- aGGAUCUUACGCGUCGGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 150918 0.83 0.17627
Target:  5'- aAGAUCCUACGCGUCcGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 130559 0.82 0.190518
Target:  5'- aAGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 21178 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12444 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 2819 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130794 0.82 0.195488
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72488 0.81 0.222064
Target:  5'- aAAAUCUUACGCGUCGGCCGGGUcgCGg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCGa-GUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.