miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 5' -49.2 NC_001973.1 + 40994 0.94 0.101014
Target:  5'- cGAUUGACCCUUGCCaACGCGUAAAAUc -3'
miRNA:   3'- -CUAACUGGGAACGGcUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 114732 0.9 0.184038
Target:  5'- cGAUUGACCCUUGCCGGCaCGUAAAu- -3'
miRNA:   3'- -CUAACUGGGAACGGCUGcGCAUUUua -5'
8052 5' -49.2 NC_001973.1 + 40841 0.88 0.226897
Target:  5'- ---cGACCCUaGCCGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUGGGAaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 114576 0.88 0.226897
Target:  5'- uGUUGACCCUUGCCGGCaCGUAAAAUc -3'
miRNA:   3'- cUAACUGGGAACGGCUGcGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 41073 0.85 0.329716
Target:  5'- cGAUcGACCCcgGCCGGCGCGUAAGAUc -3'
miRNA:   3'- -CUAaCUGGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 114964 0.81 0.513458
Target:  5'- uGUUaACCCcUGCCGACGCGUAAAAUc -3'
miRNA:   3'- cUAAcUGGGaACGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 126088 0.8 0.576618
Target:  5'- aGUUGAgCCCgagagcgUGCCGACGCGUGAGc- -3'
miRNA:   3'- cUAACU-GGGa------ACGGCUGCGCAUUUua -5'
8052 5' -49.2 NC_001973.1 + 114811 0.79 0.587342
Target:  5'- ---cGACCCUaaCCGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUGGGAacGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 126046 0.78 0.652146
Target:  5'- -uUUGAgCUcUGCCGACGCGUAAGAc -3'
miRNA:   3'- cuAACUgGGaACGGCUGCGCAUUUUa -5'
8052 5' -49.2 NC_001973.1 + 40918 0.77 0.726754
Target:  5'- --aUGACCCUaGCCGGCaCGUAAGAUc -3'
miRNA:   3'- cuaACUGGGAaCGGCUGcGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 114657 0.74 0.842214
Target:  5'- ---cGACCCUUGCCGcCaCGUAAAAUc -3'
miRNA:   3'- cuaaCUGGGAACGGCuGcGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 19690 0.74 0.850675
Target:  5'- ----cGCCUcgGCCGGCGCGUAAAAUc -3'
miRNA:   3'- cuaacUGGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72365 0.74 0.858915
Target:  5'- ---cGAgCUcgGCCGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 150900 0.74 0.858915
Target:  5'- ---cGAgCUcgGCCGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 2683 0.74 0.866926
Target:  5'- ---cGAgCUcgGCCGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 12424 0.72 0.922067
Target:  5'- -cUUGAgCUcgGCUGACGCGUAGGAUu -3'
miRNA:   3'- cuAACUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72206 0.71 0.938413
Target:  5'- aGUUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cUAACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 111955 0.7 0.964037
Target:  5'- ---cGACCCggcgGCCGAgCGCGUGc--- -3'
miRNA:   3'- cuaaCUGGGaa--CGGCU-GCGCAUuuua -5'
8052 5' -49.2 NC_001973.1 + 2798 0.7 0.967436
Target:  5'- aAUUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cUAACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 47798 0.69 0.981071
Target:  5'- ---cGGCCgCgccgGCCGACGCGUGc--- -3'
miRNA:   3'- cuaaCUGG-Gaa--CGGCUGCGCAUuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.