miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 5' -49.2 NC_001973.1 + 2086 0.69 0.985116
Target:  5'- ---cGACUCUUccgcaaucGCCGGCGCGUAc--- -3'
miRNA:   3'- cuaaCUGGGAA--------CGGCUGCGCAUuuua -5'
8052 5' -49.2 NC_001973.1 + 2683 0.74 0.866926
Target:  5'- ---cGAgCUcgGCCGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 2798 0.7 0.967436
Target:  5'- aAUUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cUAACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 12190 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 12424 0.72 0.922067
Target:  5'- -cUUGAgCUcgGCUGACGCGUAGGAUu -3'
miRNA:   3'- cuAACUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 16439 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 16517 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 19690 0.74 0.850675
Target:  5'- ----cGCCUcgGCCGGCGCGUAAAAUc -3'
miRNA:   3'- cuaacUGGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 20962 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 40841 0.88 0.226897
Target:  5'- ---cGACCCUaGCCGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUGGGAaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 40918 0.77 0.726754
Target:  5'- --aUGACCCUaGCCGGCaCGUAAGAUc -3'
miRNA:   3'- cuaACUGGGAaCGGCUGcGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 40994 0.94 0.101014
Target:  5'- cGAUUGACCCUUGCCaACGCGUAAAAUc -3'
miRNA:   3'- -CUAACUGGGAACGGcUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 41073 0.85 0.329716
Target:  5'- cGAUcGACCCcgGCCGGCGCGUAAGAUc -3'
miRNA:   3'- -CUAaCUGGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 47798 0.69 0.981071
Target:  5'- ---cGGCCgCgccgGCCGACGCGUGc--- -3'
miRNA:   3'- cuaaCUGG-Gaa--CGGCUGCGCAUuuua -5'
8052 5' -49.2 NC_001973.1 + 71940 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72027 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72206 0.71 0.938413
Target:  5'- aGUUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cUAACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72287 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72365 0.74 0.858915
Target:  5'- ---cGAgCUcgGCCGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72470 0.66 0.998556
Target:  5'- ---cGAgCUcgGCgGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.