Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8053 | 5' | -55 | NC_001973.1 | + | 114721 | 0.86 | 0.136711 |
Target: 5'- gGGUUUGAACUCGAUUGACCCuugcCGGCAc -3' miRNA: 3'- -CCGAGCUUGAGCUAACUGGG----GCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 41062 | 0.83 | 0.204558 |
Target: 5'- gGGCUUGAACcCGAUcGACCCCGGCc- -3' miRNA: 3'- -CCGAGCUUGaGCUAaCUGGGGCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 115030 | 0.81 | 0.248398 |
Target: 5'- cGGUUUGAACcCGAUcGACCCCGGCGu -3' miRNA: 3'- -CCGAGCUUGaGCUAaCUGGGGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 114564 | 0.8 | 0.299725 |
Target: 5'- gGGCUUGAACUCuGUUGACCCuugcCGGCAc -3' miRNA: 3'- -CCGAGCUUGAGcUAACUGGG----GCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 55899 | 0.76 | 0.452641 |
Target: 5'- aGGCUCGGGCUCGGgcucgGGCUCgGGCu- -3' miRNA: 3'- -CCGAGCUUGAGCUaa---CUGGGgCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 55929 | 0.76 | 0.480454 |
Target: 5'- gGGCUCGGGCUCGAguaguacgGACUCgGGCc- -3' miRNA: 3'- -CCGAGCUUGAGCUaa------CUGGGgCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 40982 | 0.74 | 0.588399 |
Target: 5'- cGGaUUUGAACUCGAUUGACCCUuGCc- -3' miRNA: 3'- -CC-GAGCUUGAGCUAACUGGGGcCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 129378 | 0.73 | 0.639183 |
Target: 5'- aGCUCGAACUCGGUUGAUaaaCuuGGUu- -3' miRNA: 3'- cCGAGCUUGAGCUAACUG---GggCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 128557 | 0.73 | 0.649354 |
Target: 5'- uGCUUGAAC-CGcUUGGCCgCCGGCAu -3' miRNA: 3'- cCGAGCUUGaGCuAACUGG-GGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 58030 | 0.73 | 0.649354 |
Target: 5'- cGCUCGAuCUCG---GGCUCCGGCGGc -3' miRNA: 3'- cCGAGCUuGAGCuaaCUGGGGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 42145 | 0.73 | 0.659512 |
Target: 5'- aGGCgCGAcuguuACUCGAguugUGGCCgCCGGUGGa -3' miRNA: 3'- -CCGaGCU-----UGAGCUa---ACUGG-GGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 115063 | 0.72 | 0.709803 |
Target: 5'- aGCUCGAGCaaaccCGAUUccGGCCUCGGCGu -3' miRNA: 3'- cCGAGCUUGa----GCUAA--CUGGGGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 114874 | 0.71 | 0.758461 |
Target: 5'- cGGCUUGAACUCuGUUaACCCCugccGGCAc -3' miRNA: 3'- -CCGAGCUUGAGcUAAcUGGGG----CCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 77643 | 0.7 | 0.8217 |
Target: 5'- aGUUCGAGCgagcguUCGAgUUGGCCaccgaCCGGCAGa -3' miRNA: 3'- cCGAGCUUG------AGCU-AACUGG-----GGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 146365 | 0.69 | 0.838359 |
Target: 5'- gGGCUCcaGAcACaUGAgcgUGugCCCGGCGGg -3' miRNA: 3'- -CCGAG--CU-UGaGCUa--ACugGGGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 55812 | 0.69 | 0.854277 |
Target: 5'- cGGCUCGAACggCGAcagaGGCCugcggaCCGGCGa -3' miRNA: 3'- -CCGAGCUUGa-GCUaa--CUGG------GGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 40890 | 0.68 | 0.872325 |
Target: 5'- aGGCaugaucucaucugauUUGAACUCGA-UGACCCuagcCGGCAc -3' miRNA: 3'- -CCG---------------AGCUUGAGCUaACUGGG----GCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 146081 | 0.68 | 0.887795 |
Target: 5'- cGGCUCGGGCgggCGGggacuaaggucgGGCCgCGGCGc -3' miRNA: 3'- -CCGAGCUUGa--GCUaa----------CUGGgGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 114952 | 0.68 | 0.890493 |
Target: 5'- cGGCUUGAACUCuGUUaACCCCuGCc- -3' miRNA: 3'- -CCGAGCUUGAGcUAAcUGGGGcCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 22761 | 0.68 | 0.902814 |
Target: 5'- gGGggCGAGCUCGAcaucGACCUggucgggCGGCAGu -3' miRNA: 3'- -CCgaGCUUGAGCUaa--CUGGG-------GCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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