Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8053 | 5' | -55 | NC_001973.1 | + | 16435 | 0.67 | 0.92865 |
Target: 5'- cGCUCGAGCUCGGcgGACgCguaagauuuuacgugCCGGcCGGg -3' miRNA: 3'- cCGAGCUUGAGCUaaCUG-G---------------GGCC-GUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 18324 | 0.67 | 0.915463 |
Target: 5'- aGCUCGcuCUUGGUcggaUGGCCgCCGGcCAGc -3' miRNA: 3'- cCGAGCuuGAGCUA----ACUGG-GGCC-GUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 20517 | 0.67 | 0.926547 |
Target: 5'- aGGuCUUGAAC-CGuUUGGCCgCUGGCAu -3' miRNA: 3'- -CC-GAGCUUGaGCuAACUGG-GGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 21545 | 0.66 | 0.954158 |
Target: 5'- cGGCgUCGGGCgCGccgUGGUCCCGGCGc -3' miRNA: 3'- -CCG-AGCUUGaGCua-ACUGGGGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 22761 | 0.68 | 0.902814 |
Target: 5'- gGGggCGAGCUCGAcaucGACCUggucgggCGGCAGu -3' miRNA: 3'- -CCgaGCUUGAGCUaa--CUGGG-------GCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 34455 | 0.67 | 0.915463 |
Target: 5'- -uCUCGGACUCGAUgaUGGCgUUGGUGGu -3' miRNA: 3'- ccGAGCUUGAGCUA--ACUGgGGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 38570 | 0.66 | 0.941402 |
Target: 5'- aGCUCGAagcGCaCGAUUcGCCgCCGGCGc -3' miRNA: 3'- cCGAGCU---UGaGCUAAcUGG-GGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 40890 | 0.68 | 0.872325 |
Target: 5'- aGGCaugaucucaucugauUUGAACUCGA-UGACCCuagcCGGCAc -3' miRNA: 3'- -CCG---------------AGCUUGAGCUaACUGGG----GCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 40982 | 0.74 | 0.588399 |
Target: 5'- cGGaUUUGAACUCGAUUGACCCUuGCc- -3' miRNA: 3'- -CC-GAGCUUGAGCUAACUGGGGcCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 41062 | 0.83 | 0.204558 |
Target: 5'- gGGCUUGAACcCGAUcGACCCCGGCc- -3' miRNA: 3'- -CCGAGCUUGaGCUAaCUGGGGCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 42145 | 0.73 | 0.659512 |
Target: 5'- aGGCgCGAcuguuACUCGAguugUGGCCgCCGGUGGa -3' miRNA: 3'- -CCGaGCU-----UGAGCUa---ACUGG-GGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 54381 | 0.66 | 0.954158 |
Target: 5'- uGGCguagCGAGCg-----GGCaCCCGGCGGa -3' miRNA: 3'- -CCGa---GCUUGagcuaaCUG-GGGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 55812 | 0.69 | 0.854277 |
Target: 5'- cGGCUCGAACggCGAcagaGGCCugcggaCCGGCGa -3' miRNA: 3'- -CCGAGCUUGa-GCUaa--CUGG------GGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 55899 | 0.76 | 0.452641 |
Target: 5'- aGGCUCGGGCUCGGgcucgGGCUCgGGCu- -3' miRNA: 3'- -CCGAGCUUGAGCUaa---CUGGGgCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 55929 | 0.76 | 0.480454 |
Target: 5'- gGGCUCGGGCUCGAguaguacgGACUCgGGCc- -3' miRNA: 3'- -CCGAGCUUGAGCUaa------CUGGGgCCGuc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 56390 | 0.65 | 0.957955 |
Target: 5'- aGGCUCGGuaucggGCUCGAagccGAgCUCGGUAu -3' miRNA: 3'- -CCGAGCU------UGAGCUaa--CUgGGGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 58030 | 0.73 | 0.649354 |
Target: 5'- cGCUCGAuCUCG---GGCUCCGGCGGc -3' miRNA: 3'- cCGAGCUuGAGCuaaCUGGGGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 67384 | 0.67 | 0.909568 |
Target: 5'- aGUUUGAGCUgaaCG-UUGGgCCCGGCGGu -3' miRNA: 3'- cCGAGCUUGA---GCuAACUgGGGCCGUC- -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 70079 | 0.67 | 0.917755 |
Target: 5'- cGGCagggCGGGCUCGAUguUGugcgcgagcgcgaacGCCUCGGCGc -3' miRNA: 3'- -CCGa---GCUUGAGCUA--AC---------------UGGGGCCGUc -5' |
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8053 | 5' | -55 | NC_001973.1 | + | 77643 | 0.7 | 0.8217 |
Target: 5'- aGUUCGAGCgagcguUCGAgUUGGCCaccgaCCGGCAGa -3' miRNA: 3'- cCGAGCUUG------AGCU-AACUGG-----GGCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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