miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8055 5' -55.1 NC_001973.1 + 90093 0.66 0.92344
Target:  5'- cGGCCGGcGACuuGCCGGCGCCGAa---- -3'
miRNA:   3'- -UCGGUUcUUG--CGGUCGCGGUUgucau -5'
8055 5' -55.1 NC_001973.1 + 55532 0.66 0.911738
Target:  5'- cGUCGAGcAGCGUC-GCGCCGuACAGg- -3'
miRNA:   3'- uCGGUUC-UUGCGGuCGCGGU-UGUCau -5'
8055 5' -55.1 NC_001973.1 + 10495 0.66 0.911738
Target:  5'- uGCaCGAGcgGGCGCgcucgcgguuCAGCGCCAgGCAGUAg -3'
miRNA:   3'- uCG-GUUC--UUGCG----------GUCGCGGU-UGUCAU- -5'
8055 5' -55.1 NC_001973.1 + 59917 0.66 0.911738
Target:  5'- gAGCCAGccGcGCGCCgcGGCGCC-GCAGc- -3'
miRNA:   3'- -UCGGUU--CuUGCGG--UCGCGGuUGUCau -5'
8055 5' -55.1 NC_001973.1 + 28943 0.66 0.905515
Target:  5'- cGGCUggGGcgGCaGCgGGgGCCGGCAGUc -3'
miRNA:   3'- -UCGGuuCU--UG-CGgUCgCGGUUGUCAu -5'
8055 5' -55.1 NC_001973.1 + 62925 0.66 0.905515
Target:  5'- cGCCGAuucGAcucGgGCCGGCGUCGuCAGUAg -3'
miRNA:   3'- uCGGUU---CU---UgCGGUCGCGGUuGUCAU- -5'
8055 5' -55.1 NC_001973.1 + 145036 0.66 0.892335
Target:  5'- cGGCgCGAGcGCGUCgAGCGCCGACu--- -3'
miRNA:   3'- -UCG-GUUCuUGCGG-UCGCGGUUGucau -5'
8055 5' -55.1 NC_001973.1 + 16195 0.66 0.892335
Target:  5'- aGGCCGcuAGAGCGCgcugcgcguuCAGCGCCAcgaAC-GUAg -3'
miRNA:   3'- -UCGGU--UCUUGCG----------GUCGCGGU---UGuCAU- -5'
8055 5' -55.1 NC_001973.1 + 103974 0.67 0.885384
Target:  5'- uAGCCGGGGcgugccguugcgACGCCAGCaGCCuagcCGGg- -3'
miRNA:   3'- -UCGGUUCU------------UGCGGUCG-CGGuu--GUCau -5'
8055 5' -55.1 NC_001973.1 + 97132 0.67 0.885384
Target:  5'- uGGUCGAGAacgaaACGCCGGCucgacugaucGCCAACGa-- -3'
miRNA:   3'- -UCGGUUCU-----UGCGGUCG----------CGGUUGUcau -5'
8055 5' -55.1 NC_001973.1 + 95710 0.67 0.885384
Target:  5'- cGCCGAcGGCGCgGuGCGCCGGCuGUu -3'
miRNA:   3'- uCGGUUcUUGCGgU-CGCGGUUGuCAu -5'
8055 5' -55.1 NC_001973.1 + 109188 0.67 0.878199
Target:  5'- cGCCGAGcGCGCCGcGCaGCCGGCc--- -3'
miRNA:   3'- uCGGUUCuUGCGGU-CG-CGGUUGucau -5'
8055 5' -55.1 NC_001973.1 + 93969 0.67 0.878199
Target:  5'- cGCCAAGGACGCgGccaugugcgaGCGCaacaAGCAGa- -3'
miRNA:   3'- uCGGUUCUUGCGgU----------CGCGg---UUGUCau -5'
8055 5' -55.1 NC_001973.1 + 58990 0.67 0.877468
Target:  5'- gAGCaCAAGAucGCGCaggcgagCGGCGCCGAC-GUGu -3'
miRNA:   3'- -UCG-GUUCU--UGCG-------GUCGCGGUUGuCAU- -5'
8055 5' -55.1 NC_001973.1 + 6408 0.67 0.877468
Target:  5'- uGGCCGAGuGCGCgGcggcggcGCGCCGACGa-- -3'
miRNA:   3'- -UCGGUUCuUGCGgU-------CGCGGUUGUcau -5'
8055 5' -55.1 NC_001973.1 + 26162 0.67 0.870785
Target:  5'- gGGCCAGuucCGCCGGCGCgGGCGcGUc -3'
miRNA:   3'- -UCGGUUcuuGCGGUCGCGgUUGU-CAu -5'
8055 5' -55.1 NC_001973.1 + 87442 0.67 0.870785
Target:  5'- uAGCCAuggGGAugGgCCcgacGGCGCgCAGCAGg- -3'
miRNA:   3'- -UCGGU---UCUugC-GG----UCGCG-GUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 30354 0.67 0.870785
Target:  5'- aGGCCGAGuucgggcCGCCGGCGCggCGACucgGGUGc -3'
miRNA:   3'- -UCGGUUCuu-----GCGGUCGCG--GUUG---UCAU- -5'
8055 5' -55.1 NC_001973.1 + 135948 0.67 0.863146
Target:  5'- cGCCAAGuGCGCCaAGUGgCAAaGGUAu -3'
miRNA:   3'- uCGGUUCuUGCGG-UCGCgGUUgUCAU- -5'
8055 5' -55.1 NC_001973.1 + 103943 0.67 0.855289
Target:  5'- cGCgGGGcgUGCCgucgcGGCGCCAGCAGc- -3'
miRNA:   3'- uCGgUUCuuGCGG-----UCGCGGUUGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.