miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8057 5' -57.2 NC_001973.1 + 151384 0.76 0.35191
Target:  5'- cGGCCGgGGUCGUCUgAGGUuagaauaACGCGGGCg -3'
miRNA:   3'- -UCGGCgUCAGCAGG-UCCG-------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 44973 0.75 0.384782
Target:  5'- gGGCCGCA--CGUCCGGGUGCGCGu-- -3'
miRNA:   3'- -UCGGCGUcaGCAGGUCCGUGUGCuug -5'
8057 5' -57.2 NC_001973.1 + 97883 0.73 0.463669
Target:  5'- gGGCguaGCAGUCGcCCuucauGCACACGAACa -3'
miRNA:   3'- -UCGg--CGUCAGCaGGuc---CGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 52721 0.72 0.540313
Target:  5'- cGCCGCAGcUCGagcgCCAGGCgGCGCGucuCg -3'
miRNA:   3'- uCGGCGUC-AGCa---GGUCCG-UGUGCuu-G- -5'
8057 5' -57.2 NC_001973.1 + 30486 0.72 0.56018
Target:  5'- uGGCCGCAGUCGggcacgaCGGuGCGCA-GGGCg -3'
miRNA:   3'- -UCGGCGUCAGCag-----GUC-CGUGUgCUUG- -5'
8057 5' -57.2 NC_001973.1 + 21552 0.72 0.56018
Target:  5'- gGGCgCGCcGUgGUCCcGGCGCGCGGGg -3'
miRNA:   3'- -UCG-GCGuCAgCAGGuCCGUGUGCUUg -5'
8057 5' -57.2 NC_001973.1 + 101556 0.71 0.590335
Target:  5'- gGGUgGCGcGUgGUCCAGGCGCGCa--- -3'
miRNA:   3'- -UCGgCGU-CAgCAGGUCCGUGUGcuug -5'
8057 5' -57.2 NC_001973.1 + 123432 0.71 0.590335
Target:  5'- uGCaCGCGGUCGUCagcGGCACGCa--- -3'
miRNA:   3'- uCG-GCGUCAGCAGgu-CCGUGUGcuug -5'
8057 5' -57.2 NC_001973.1 + 117857 0.71 0.590335
Target:  5'- cAGCCGC--UCGUaCUgcggccacgugAGGCACACGAGCc -3'
miRNA:   3'- -UCGGCGucAGCA-GG-----------UCCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 88918 0.7 0.637028
Target:  5'- -cCCGCAGcCGUCCAGcucucgcagcucuCGCGCGAACa -3'
miRNA:   3'- ucGGCGUCaGCAGGUCc------------GUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 133924 0.7 0.651257
Target:  5'- cGCCGCcc-UGUCCAGGUgguagcACGCGGGCu -3'
miRNA:   3'- uCGGCGucaGCAGGUCCG------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 81803 0.7 0.661404
Target:  5'- cGGCCGCGGU-GUCCGGcGC-CGCcGGCg -3'
miRNA:   3'- -UCGGCGUCAgCAGGUC-CGuGUGcUUG- -5'
8057 5' -57.2 NC_001973.1 + 101162 0.7 0.671528
Target:  5'- gAGCgCGCAGUCGUgCAGcagguccuccacGCGC-CGGGCg -3'
miRNA:   3'- -UCG-GCGUCAGCAgGUC------------CGUGuGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 95318 0.69 0.68162
Target:  5'- cGCCGCGcGuUCGUCgAgucGGCGCGCGAGu -3'
miRNA:   3'- uCGGCGU-C-AGCAGgU---CCGUGUGCUUg -5'
8057 5' -57.2 NC_001973.1 + 39418 0.69 0.71162
Target:  5'- cGGCCGCGGUgaggcgcgucgCGUCCAgGGCgACGCcGAUg -3'
miRNA:   3'- -UCGGCGUCA-----------GCAGGU-CCG-UGUGcUUG- -5'
8057 5' -57.2 NC_001973.1 + 53519 0.69 0.721498
Target:  5'- cGGCCGCGccGUCGggCCuGuacCACACGAACa -3'
miRNA:   3'- -UCGGCGU--CAGCa-GGuCc--GUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 17261 0.69 0.7313
Target:  5'- cGGCCGCGG-CGgCCGcGCACuCGGGCa -3'
miRNA:   3'- -UCGGCGUCaGCaGGUcCGUGuGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 68381 0.68 0.741018
Target:  5'- cGGCCGgcaAGUCGcCCAGGUACAgGu-- -3'
miRNA:   3'- -UCGGCg--UCAGCaGGUCCGUGUgCuug -5'
8057 5' -57.2 NC_001973.1 + 62489 0.68 0.741018
Target:  5'- uGCUGUGGUCGUac-GGCAacCGCGAGCa -3'
miRNA:   3'- uCGGCGUCAGCAgguCCGU--GUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 73649 0.68 0.750642
Target:  5'- cGUCGCAcUCGUUgAGGCGCcggcccuCGAACg -3'
miRNA:   3'- uCGGCGUcAGCAGgUCCGUGu------GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.