miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8057 5' -57.2 NC_001973.1 + 7849 0.66 0.855607
Target:  5'- cGCCGCGcccGUCGagCuGGCGCGCcaGGGCg -3'
miRNA:   3'- uCGGCGU---CAGCagGuCCGUGUG--CUUG- -5'
8057 5' -57.2 NC_001973.1 + 10032 0.66 0.847784
Target:  5'- aAGuuGUAGUCGUuguUCugguGGCGCACGuGCc -3'
miRNA:   3'- -UCggCGUCAGCA---GGu---CCGUGUGCuUG- -5'
8057 5' -57.2 NC_001973.1 + 14251 0.67 0.805911
Target:  5'- cGCCGCGcGUCGacaCCAGcaCGCGCGAAUc -3'
miRNA:   3'- uCGGCGU-CAGCa--GGUCc-GUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 16204 0.67 0.797038
Target:  5'- gAGCgCGCuGcgCGUUCAGcGC-CACGAACg -3'
miRNA:   3'- -UCG-GCGuCa-GCAGGUC-CGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 17261 0.69 0.7313
Target:  5'- cGGCCGCGG-CGgCCGcGCACuCGGGCa -3'
miRNA:   3'- -UCGGCGUCaGCaGGUcCGUGuGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 21273 0.66 0.87065
Target:  5'- gAGCCGCGG-CGUCCgccGGGC-CGucgcucagucguCGGGCu -3'
miRNA:   3'- -UCGGCGUCaGCAGG---UCCGuGU------------GCUUG- -5'
8057 5' -57.2 NC_001973.1 + 21552 0.72 0.56018
Target:  5'- gGGCgCGCcGUgGUCCcGGCGCGCGGGg -3'
miRNA:   3'- -UCG-GCGuCAgCAGGuCCGUGUGCUUg -5'
8057 5' -57.2 NC_001973.1 + 22737 0.66 0.838955
Target:  5'- gAGCCGCGGcCGUaucugugCgAGGgGgGCGAGCu -3'
miRNA:   3'- -UCGGCGUCaGCA-------GgUCCgUgUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 23939 0.68 0.760163
Target:  5'- cGCCGCGGUCGUC--GGCAaGCGcuCu -3'
miRNA:   3'- uCGGCGUCAGCAGguCCGUgUGCuuG- -5'
8057 5' -57.2 NC_001973.1 + 25895 0.66 0.847784
Target:  5'- cGuuGCg--CGUCCAGGCAaACGGAg -3'
miRNA:   3'- uCggCGucaGCAGGUCCGUgUGCUUg -5'
8057 5' -57.2 NC_001973.1 + 25973 0.66 0.87065
Target:  5'- cGUCGUcGUCGUCUcGGCGCuCGAccgGCg -3'
miRNA:   3'- uCGGCGuCAGCAGGuCCGUGuGCU---UG- -5'
8057 5' -57.2 NC_001973.1 + 27866 0.67 0.814628
Target:  5'- cGGCCGCGGcCGcgggCgCGGGCGCGCu--- -3'
miRNA:   3'- -UCGGCGUCaGCa---G-GUCCGUGUGcuug -5'
8057 5' -57.2 NC_001973.1 + 30486 0.72 0.56018
Target:  5'- uGGCCGCAGUCGggcacgaCGGuGCGCA-GGGCg -3'
miRNA:   3'- -UCGGCGUCAGCag-----GUC-CGUGUgCUUG- -5'
8057 5' -57.2 NC_001973.1 + 32570 0.67 0.805911
Target:  5'- cGCCGCcGUCGgCUcGGCgcgcugcgACACGGACg -3'
miRNA:   3'- uCGGCGuCAGCaGGuCCG--------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 39418 0.69 0.71162
Target:  5'- cGGCCGCGGUgaggcgcgucgCGUCCAgGGCgACGCcGAUg -3'
miRNA:   3'- -UCGGCGUCA-----------GCAGGU-CCG-UGUGcUUG- -5'
8057 5' -57.2 NC_001973.1 + 44973 0.75 0.384782
Target:  5'- gGGCCGCA--CGUCCGGGUGCGCGu-- -3'
miRNA:   3'- -UCGGCGUcaGCAGGUCCGUGUGCuug -5'
8057 5' -57.2 NC_001973.1 + 45993 0.68 0.760163
Target:  5'- cGCUGguGcCGcgaugCC-GGCGCGCGAGCg -3'
miRNA:   3'- uCGGCguCaGCa----GGuCCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 51452 0.66 0.877856
Target:  5'- aGGCCGCGa--GcCCGGGCGagcuCGAGCg -3'
miRNA:   3'- -UCGGCGUcagCaGGUCCGUgu--GCUUG- -5'
8057 5' -57.2 NC_001973.1 + 52143 0.66 0.863231
Target:  5'- cGCCGCAGaaacUCGggcagCCgguGGGCGCcguacuuggcgACGAGCg -3'
miRNA:   3'- uCGGCGUC----AGCa----GG---UCCGUG-----------UGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 52721 0.72 0.540313
Target:  5'- cGCCGCAGcUCGagcgCCAGGCgGCGCGucuCg -3'
miRNA:   3'- uCGGCGUC-AGCa---GGUCCG-UGUGCuu-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.