miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8058 5' -59.9 NC_001973.1 + 134872 0.8 0.15092
Target:  5'- gCAGCCUCggCCGUCGcAGCGgCACUCGUu -3'
miRNA:   3'- aGUCGGGGa-GGCAGC-UCGC-GUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 92413 0.73 0.378315
Target:  5'- aCGGCCacgCUUCCGUCGGGCaugacgauaccccaGCACUCGa -3'
miRNA:   3'- aGUCGG---GGAGGCAGCUCG--------------CGUGAGCg -5'
8058 5' -59.9 NC_001973.1 + 90727 0.73 0.378315
Target:  5'- aCGGCCacgCUUCCGUCGGGCaugacgacgccccaGCACUCGa -3'
miRNA:   3'- aGUCGG---GGAGGCAGCUCG--------------CGUGAGCg -5'
8058 5' -59.9 NC_001973.1 + 25923 0.73 0.380701
Target:  5'- gCAGCUCgCcgCCG-CGGGCGgGCUCGCg -3'
miRNA:   3'- aGUCGGG-Ga-GGCaGCUCGCgUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 50997 0.72 0.402629
Target:  5'- aCGGCUacaUCUCCGUCGGGCaugacgacgccccaGCACUCGa -3'
miRNA:   3'- aGUCGG---GGAGGCAGCUCG--------------CGUGAGCg -5'
8058 5' -59.9 NC_001973.1 + 146655 0.71 0.456775
Target:  5'- --cGCCCaCcCUGUUGAGCGCGCUCa- -3'
miRNA:   3'- aguCGGG-GaGGCAGCUCGCGUGAGcg -5'
8058 5' -59.9 NC_001973.1 + 109353 0.71 0.456775
Target:  5'- gCAGCUCCgcucggCCGUagcggucgaCGAGCGC-CUCGUa -3'
miRNA:   3'- aGUCGGGGa-----GGCA---------GCUCGCGuGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 28727 0.71 0.465727
Target:  5'- aCAGCUUCU-CGUCGAGCcCGCUCaGCa -3'
miRNA:   3'- aGUCGGGGAgGCAGCUCGcGUGAG-CG- -5'
8058 5' -59.9 NC_001973.1 + 138889 0.71 0.483898
Target:  5'- aCGGCCgCgCCGUCGAugGUGCACUUGa -3'
miRNA:   3'- aGUCGGgGaGGCAGCU--CGCGUGAGCg -5'
8058 5' -59.9 NC_001973.1 + 124004 0.71 0.483898
Target:  5'- gCGGCCUgaCCaGUCGGGCGaCGCgcgCGCa -3'
miRNA:   3'- aGUCGGGgaGG-CAGCUCGC-GUGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 10477 0.71 0.500538
Target:  5'- aCAcGCCCgUgCUGggguugcacgagCGGGCGCGCUCGCg -3'
miRNA:   3'- aGU-CGGGgA-GGCa-----------GCUCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 121458 0.7 0.51177
Target:  5'- aCGGCCCCgCCGgaauaUGGGCGCGCcCGg -3'
miRNA:   3'- aGUCGGGGaGGCa----GCUCGCGUGaGCg -5'
8058 5' -59.9 NC_001973.1 + 52114 0.7 0.520262
Target:  5'- cCAGCCCCUCggCGUuuuggucgaaCGAGCGCcgcagaaACUCGg -3'
miRNA:   3'- aGUCGGGGAG--GCA----------GCUCGCG-------UGAGCg -5'
8058 5' -59.9 NC_001973.1 + 137191 0.7 0.559588
Target:  5'- cUCAGCCaCUCgCGgcgCGAGuCGCGCggcggCGCg -3'
miRNA:   3'- -AGUCGGgGAG-GCa--GCUC-GCGUGa----GCG- -5'
8058 5' -59.9 NC_001973.1 + 7845 0.7 0.559588
Target:  5'- gCGGCgCCgcgcCCGUCGAGCugGCGCgccagggCGCg -3'
miRNA:   3'- aGUCGgGGa---GGCAGCUCG--CGUGa------GCG- -5'
8058 5' -59.9 NC_001973.1 + 73628 0.7 0.559588
Target:  5'- aCGGCUCg-CCGUCc-GCGCGCUCGUc -3'
miRNA:   3'- aGUCGGGgaGGCAGcuCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 121606 0.69 0.569313
Target:  5'- aUCAGCgUgUgaUUGUCGAGCaGCACUUGCa -3'
miRNA:   3'- -AGUCGgGgA--GGCAGCUCG-CGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 17920 0.69 0.588881
Target:  5'- aUCAGCCCgUaaaacaCGUUGGGCGUgACgcgCGCg -3'
miRNA:   3'- -AGUCGGGgAg-----GCAGCUCGCG-UGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 107794 0.69 0.598712
Target:  5'- -aAGCCUCuuaUCUGcUCGAgcagacucGCGCACUCGCc -3'
miRNA:   3'- agUCGGGG---AGGC-AGCU--------CGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 77874 0.69 0.598712
Target:  5'- aCGGCCCa-CCGUCGAGCccgaggaccuGUGCcgUCGCa -3'
miRNA:   3'- aGUCGGGgaGGCAGCUCG----------CGUG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.