miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8058 5' -59.9 NC_001973.1 + 6035 0.68 0.667793
Target:  5'- -gAGCgCgCUCCGUUGAcgcGCGCGCUCu- -3'
miRNA:   3'- agUCGgG-GAGGCAGCU---CGCGUGAGcg -5'
8058 5' -59.9 NC_001973.1 + 6425 0.66 0.763459
Target:  5'- gCGGCgCg-CCGaCGAGCGCGCccgUCGCc -3'
miRNA:   3'- aGUCGgGgaGGCaGCUCGCGUG---AGCG- -5'
8058 5' -59.9 NC_001973.1 + 6869 0.69 0.599697
Target:  5'- -gAGCCgCgaggagaucuugcaCGUCGAGCGCcacACUCGCg -3'
miRNA:   3'- agUCGGgGag------------GCAGCUCGCG---UGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 7845 0.7 0.559588
Target:  5'- gCGGCgCCgcgcCCGUCGAGCugGCGCgccagggCGCg -3'
miRNA:   3'- aGUCGgGGa---GGCAGCUCG--CGUGa------GCG- -5'
8058 5' -59.9 NC_001973.1 + 10477 0.71 0.500538
Target:  5'- aCAcGCCCgUgCUGggguugcacgagCGGGCGCGCUCGCg -3'
miRNA:   3'- aGU-CGGGgA-GGCa-----------GCUCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 16187 0.69 0.608566
Target:  5'- gUCGGCgCaggCCGcuaGAGCGCGCUgCGCg -3'
miRNA:   3'- -AGUCGgGga-GGCag-CUCGCGUGA-GCG- -5'
8058 5' -59.9 NC_001973.1 + 17580 0.68 0.657945
Target:  5'- aUCGGCgCCCga-GUCG-GCGUGCUgGCa -3'
miRNA:   3'- -AGUCG-GGGaggCAGCuCGCGUGAgCG- -5'
8058 5' -59.9 NC_001973.1 + 17920 0.69 0.588881
Target:  5'- aUCAGCCCgUaaaacaCGUUGGGCGUgACgcgCGCg -3'
miRNA:   3'- -AGUCGGGgAg-----GCAGCUCGCG-UGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 18257 0.67 0.720302
Target:  5'- gUCGGUCCCgucggcgcacacggCCGaCGAGgGCACcagCGCc -3'
miRNA:   3'- -AGUCGGGGa-------------GGCaGCUCgCGUGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 21532 0.66 0.772564
Target:  5'- aCGuGCCUgauCUCggCGUCGGGCGCGC-CGUg -3'
miRNA:   3'- aGU-CGGG---GAG--GCAGCUCGCGUGaGCG- -5'
8058 5' -59.9 NC_001973.1 + 23261 0.66 0.790417
Target:  5'- gCuGCCCCgCCGc---GCGCGCUUGCc -3'
miRNA:   3'- aGuCGGGGaGGCagcuCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 23684 0.66 0.790417
Target:  5'- -gGGCCUCcgCgCGUCGAcGCGCcaGCUgCGCg -3'
miRNA:   3'- agUCGGGGa-G-GCAGCU-CGCG--UGA-GCG- -5'
8058 5' -59.9 NC_001973.1 + 25923 0.73 0.380701
Target:  5'- gCAGCUCgCcgCCG-CGGGCGgGCUCGCg -3'
miRNA:   3'- aGUCGGG-Ga-GGCaGCUCGCgUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 26165 0.66 0.763459
Target:  5'- cCAGUUCCgCCGgcgCGGGCGCGuCgacggCGCu -3'
miRNA:   3'- aGUCGGGGaGGCa--GCUCGCGU-Ga----GCG- -5'
8058 5' -59.9 NC_001973.1 + 27254 0.66 0.790417
Target:  5'- aCAGCUCCUUguaGUCGAGCauGUGgaCGCg -3'
miRNA:   3'- aGUCGGGGAGg--CAGCUCG--CGUgaGCG- -5'
8058 5' -59.9 NC_001973.1 + 27546 0.66 0.762542
Target:  5'- gCAGUCCUcCCGUCuGAGCaGCGacaucauUUCGCg -3'
miRNA:   3'- aGUCGGGGaGGCAG-CUCG-CGU-------GAGCG- -5'
8058 5' -59.9 NC_001973.1 + 27865 0.69 0.618437
Target:  5'- gCGGCCgCggCCG-CGGGCGCGggCGCg -3'
miRNA:   3'- aGUCGGgGa-GGCaGCUCGCGUgaGCG- -5'
8058 5' -59.9 NC_001973.1 + 28652 0.66 0.790417
Target:  5'- gCAGCUgCgcgagcgcggCGUCGAGCGCGCU-GCc -3'
miRNA:   3'- aGUCGGgGag--------GCAGCUCGCGUGAgCG- -5'
8058 5' -59.9 NC_001973.1 + 28727 0.71 0.465727
Target:  5'- aCAGCUUCU-CGUCGAGCcCGCUCaGCa -3'
miRNA:   3'- aGUCGGGGAgGCAGCUCGcGUGAG-CG- -5'
8058 5' -59.9 NC_001973.1 + 28916 0.66 0.781553
Target:  5'- gCAGCUCCgagUCGUUGGGCuuGCaCGCg -3'
miRNA:   3'- aGUCGGGGa--GGCAGCUCGcgUGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.