miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 5' -59.2 NC_001973.1 + 31403 0.67 0.72075
Target:  5'- uGCUCGUGCUcgucgucgugguGGGCACgAccACCGGCUc -3'
miRNA:   3'- cCGAGCGCGG------------CCUGUGgU--UGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 33427 0.66 0.77712
Target:  5'- cGGUgUCGCGCUGcaGCACguaCAGCCAGUUGu -3'
miRNA:   3'- -CCG-AGCGCGGCc-UGUG---GUUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 34307 0.73 0.381476
Target:  5'- cGUUUGCGCCGcGGCGCCAACgGGUc- -3'
miRNA:   3'- cCGAGCGCGGC-CUGUGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 36153 0.69 0.611921
Target:  5'- gGGCagCGCGCUGGuCGCguucuugcaCGACCAGCg- -3'
miRNA:   3'- -CCGa-GCGCGGCCuGUG---------GUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 39429 0.66 0.795014
Target:  5'- aGGCgcgUCGCGUCcagggcGACGCCGAugcCCAGCUc -3'
miRNA:   3'- -CCG---AGCGCGGc-----CUGUGGUU---GGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 39880 0.68 0.691474
Target:  5'- cGCUCG-G-CGG-CACCGGCCGGUUGu -3'
miRNA:   3'- cCGAGCgCgGCCuGUGGUUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 40605 0.69 0.631869
Target:  5'- uGGCggagCGCGCC----GCCGACCAGCa- -3'
miRNA:   3'- -CCGa---GCGCGGccugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 43604 0.71 0.495179
Target:  5'- gGGCguguuguaGUGCUuGGCGCCGACCAGCUc -3'
miRNA:   3'- -CCGag------CGCGGcCUGUGGUUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 44480 0.68 0.671707
Target:  5'- cGCUCGgGCgCGGGCAUCGgcGCgGGCg- -3'
miRNA:   3'- cCGAGCgCG-GCCUGUGGU--UGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 45676 0.76 0.28008
Target:  5'- cGGaUUCGCGCgUGGGCGCCGugCAGCg- -3'
miRNA:   3'- -CC-GAGCGCG-GCCUGUGGUugGUCGac -5'
8059 5' -59.2 NC_001973.1 + 46113 0.67 0.730375
Target:  5'- uGCcCGCGCUGGACGCgCGGCUGcGCa- -3'
miRNA:   3'- cCGaGCGCGGCCUGUG-GUUGGU-CGac -5'
8059 5' -59.2 NC_001973.1 + 46400 0.69 0.591037
Target:  5'- cGGCgcgCGCGCgacgacgacgacuCGGACG-CGACCAGCg- -3'
miRNA:   3'- -CCGa--GCGCG-------------GCCUGUgGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 47798 0.68 0.671707
Target:  5'- cGGC-CGCGCCGGccgacgcguGCGCCAaaucgcccGCCcGCUc -3'
miRNA:   3'- -CCGaGCGCGGCC---------UGUGGU--------UGGuCGAc -5'
8059 5' -59.2 NC_001973.1 + 48567 0.66 0.786133
Target:  5'- cGGC-CGCGCCGacGACgACCAgaugcgguACguGCUGc -3'
miRNA:   3'- -CCGaGCGCGGC--CUG-UGGU--------UGguCGAC- -5'
8059 5' -59.2 NC_001973.1 + 51765 0.68 0.701291
Target:  5'- cGCuUCGUGCC--GCACCGACC-GCUGc -3'
miRNA:   3'- cCG-AGCGCGGccUGUGGUUGGuCGAC- -5'
8059 5' -59.2 NC_001973.1 + 53415 0.7 0.551655
Target:  5'- gGGCggaGCGCCGGGCGCgucgaagCAguacACCAGCa- -3'
miRNA:   3'- -CCGag-CGCGGCCUGUG-------GU----UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 53519 0.67 0.73897
Target:  5'- cGGC-CGCGCCgucGGGCcuguACCAcacgaacACCAGCg- -3'
miRNA:   3'- -CCGaGCGCGG---CCUG----UGGU-------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 53585 0.69 0.589054
Target:  5'- aGGCgCGCGCCGG-CGCCGaggauuauuuaucgACUGGCg- -3'
miRNA:   3'- -CCGaGCGCGGCCuGUGGU--------------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 55646 0.67 0.72075
Target:  5'- cGCUcaagCGCGUCGGAUgggaGCCGagGCCGGCg- -3'
miRNA:   3'- cCGA----GCGCGGCCUG----UGGU--UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 55899 0.66 0.786133
Target:  5'- aGGCUCGgGCuCGGGCuCgGGCUcgGGCUc -3'
miRNA:   3'- -CCGAGCgCG-GCCUGuGgUUGG--UCGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.