miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 5' -59.2 NC_001973.1 + 4207 0.67 0.730375
Target:  5'- aGGUgcaUGCGCUGGaaggcGCGCCuGCCGGCg- -3'
miRNA:   3'- -CCGa--GCGCGGCC-----UGUGGuUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 4935 0.69 0.621891
Target:  5'- gGGCUCGuCGCCG---ACCGGCCGGUc- -3'
miRNA:   3'- -CCGAGC-GCGGCcugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 6177 0.66 0.803755
Target:  5'- gGGaCUUGUGCUucaugacgguGGugAUCAACCGGCg- -3'
miRNA:   3'- -CC-GAGCGCGG----------CCugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 6408 0.66 0.812348
Target:  5'- uGGCcgagugCGCGgCGGcggcGCGCCGACgAGCg- -3'
miRNA:   3'- -CCGa-----GCGCgGCC----UGUGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 6461 0.67 0.743714
Target:  5'- uGCUCGCGCgucuauuccauaaaGGACGUCAagggcgugcuguACCGGCUGg -3'
miRNA:   3'- cCGAGCGCGg-------------CCUGUGGU------------UGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 7268 0.66 0.786133
Target:  5'- gGGCUCgGCGCgCGGcGCGCCcgcuACCGGg-- -3'
miRNA:   3'- -CCGAG-CGCG-GCC-UGUGGu---UGGUCgac -5'
8059 5' -59.2 NC_001973.1 + 8115 0.71 0.495179
Target:  5'- cGGCUCGUGCagaucGGCAUCAACCGccaacuGCUGa -3'
miRNA:   3'- -CCGAGCGCGgc---CUGUGGUUGGU------CGAC- -5'
8059 5' -59.2 NC_001973.1 + 8174 0.66 0.768903
Target:  5'- cGGCgggucgacggacgagCGCGCCGacGGCACCGcuuggcGCC-GCUGg -3'
miRNA:   3'- -CCGa--------------GCGCGGC--CUGUGGU------UGGuCGAC- -5'
8059 5' -59.2 NC_001973.1 + 14376 0.66 0.77712
Target:  5'- gGGCgcggCGagGCCGGACAgUAGCCcGCg- -3'
miRNA:   3'- -CCGa---GCg-CGGCCUGUgGUUGGuCGac -5'
8059 5' -59.2 NC_001973.1 + 15985 0.73 0.387146
Target:  5'- cGCUCgaccgaaacugagcGCGCCGGACgACCGauggcGCCAGCUc -3'
miRNA:   3'- cCGAG--------------CGCGGCCUG-UGGU-----UGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 16899 0.68 0.68161
Target:  5'- uGUUCGCGCCGGcgGCGgCGGCCucucGGCg- -3'
miRNA:   3'- cCGAGCGCGGCC--UGUgGUUGG----UCGac -5'
8059 5' -59.2 NC_001973.1 + 17283 0.66 0.77712
Target:  5'- gGGCaUCGCGUCGuACGCCGccucCCGGCc- -3'
miRNA:   3'- -CCG-AGCGCGGCcUGUGGUu---GGUCGac -5'
8059 5' -59.2 NC_001973.1 + 18324 0.74 0.342614
Target:  5'- aGCUCGCucuugGUCGGAuggcCGCCGGCCAGCUu -3'
miRNA:   3'- cCGAGCG-----CGGCCU----GUGGUUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 21309 0.66 0.811496
Target:  5'- gGGCUUGCgcaucccgaugauGCCGcACGCgAGCCGGCc- -3'
miRNA:   3'- -CCGAGCG-------------CGGCcUGUGgUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 22975 0.73 0.414612
Target:  5'- cGGCggCGCGCCGacgccgacgccGACGCCGACguGCa- -3'
miRNA:   3'- -CCGa-GCGCGGC-----------CUGUGGUUGguCGac -5'
8059 5' -59.2 NC_001973.1 + 23593 0.66 0.795014
Target:  5'- cGCUgCGCGCCauaaacGACACCAACaagAGCg- -3'
miRNA:   3'- cCGA-GCGCGGc-----CUGUGGUUGg--UCGac -5'
8059 5' -59.2 NC_001973.1 + 23684 0.66 0.812348
Target:  5'- gGGCcuccgCGCGUC-GACGC--GCCAGCUGc -3'
miRNA:   3'- -CCGa----GCGCGGcCUGUGguUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 23904 0.71 0.495179
Target:  5'- cGCUCGCGCaaCGuGACGCUGACgCGGCUc -3'
miRNA:   3'- cCGAGCGCG--GC-CUGUGGUUG-GUCGAc -5'
8059 5' -59.2 NC_001973.1 + 25068 0.66 0.812348
Target:  5'- cGCguucgCGCGCCaGcucauCACCGACCGGUg- -3'
miRNA:   3'- cCGa----GCGCGGcCu----GUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 26192 0.66 0.811496
Target:  5'- cGGCgcuccagUUGCGgaaGGACGCCAGCCuGCg- -3'
miRNA:   3'- -CCG-------AGCGCgg-CCUGUGGUUGGuCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.