miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 5' -59.2 NC_001973.1 + 68603 0.79 0.182632
Target:  5'- aGGUccagCGCGCC-GAgGCCGACCAGCUGa -3'
miRNA:   3'- -CCGa---GCGCGGcCUgUGGUUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 121307 0.79 0.187152
Target:  5'- cGGCgCGCGCCGGcggacGCGCCGACgAGCUc -3'
miRNA:   3'- -CCGaGCGCGGCC-----UGUGGUUGgUCGAc -5'
8059 5' -59.2 NC_001973.1 + 87124 0.77 0.243654
Target:  5'- cGGCgugcgCGCGCCGGuGCGCC-GCCuGCUGc -3'
miRNA:   3'- -CCGa----GCGCGGCC-UGUGGuUGGuCGAC- -5'
8059 5' -59.2 NC_001973.1 + 133463 0.76 0.261351
Target:  5'- cGGgUCGCGCaCGGAgCGCCAGCgGGCg- -3'
miRNA:   3'- -CCgAGCGCG-GCCU-GUGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 45676 0.76 0.28008
Target:  5'- cGGaUUCGCGCgUGGGCGCCGugCAGCg- -3'
miRNA:   3'- -CC-GAGCGCG-GCCUGUGGUugGUCGac -5'
8059 5' -59.2 NC_001973.1 + 71757 0.75 0.304629
Target:  5'- cGGC-CGCGCCGGGCcCCGccgccgagcucgagGCCGGCg- -3'
miRNA:   3'- -CCGaGCGCGGCCUGuGGU--------------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 18324 0.74 0.342614
Target:  5'- aGCUCGCucuugGUCGGAuggcCGCCGGCCAGCUu -3'
miRNA:   3'- cCGAGCG-----CGGCCU----GUGGUUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 81092 0.74 0.342614
Target:  5'- cGUUCGCGCUGGGCGCgGGCUcGUUGa -3'
miRNA:   3'- cCGAGCGCGGCCUGUGgUUGGuCGAC- -5'
8059 5' -59.2 NC_001973.1 + 68361 0.73 0.381476
Target:  5'- gGGCUUGuCGUuuUGGAUGCCGGCCGGCa- -3'
miRNA:   3'- -CCGAGC-GCG--GCCUGUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 34307 0.73 0.381476
Target:  5'- cGUUUGCGCCGcGGCGCCAACgGGUc- -3'
miRNA:   3'- cCGAGCGCGGC-CUGUGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 15985 0.73 0.387146
Target:  5'- cGCUCgaccgaaacugagcGCGCCGGACgACCGauggcGCCAGCUc -3'
miRNA:   3'- cCGAG--------------CGCGGCCUG-UGGU-----UGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 56349 0.73 0.406163
Target:  5'- cGGC-CGCGCuCGGGCcCCGACuCGGCg- -3'
miRNA:   3'- -CCGaGCGCG-GCCUGuGGUUG-GUCGac -5'
8059 5' -59.2 NC_001973.1 + 22975 0.73 0.414612
Target:  5'- cGGCggCGCGCCGacgccgacgccGACGCCGACguGCa- -3'
miRNA:   3'- -CCGa-GCGCGGC-----------CUGUGGUUGguCGac -5'
8059 5' -59.2 NC_001973.1 + 63647 0.71 0.480308
Target:  5'- gGGCggCGCGCCGGcCGCCuguuucgagggacacGACCGGUg- -3'
miRNA:   3'- -CCGa-GCGCGGCCuGUGG---------------UUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 8115 0.71 0.495179
Target:  5'- cGGCUCGUGCagaucGGCAUCAACCGccaacuGCUGa -3'
miRNA:   3'- -CCGAGCGCGgc---CUGUGGUUGGU------CGAC- -5'
8059 5' -59.2 NC_001973.1 + 43604 0.71 0.495179
Target:  5'- gGGCguguuguaGUGCUuGGCGCCGACCAGCUc -3'
miRNA:   3'- -CCGag------CGCGGcCUGUGGUUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 23904 0.71 0.495179
Target:  5'- cGCUCGCGCaaCGuGACGCUGACgCGGCUc -3'
miRNA:   3'- cCGAGCGCG--GC-CUGUGGUUG-GUCGAc -5'
8059 5' -59.2 NC_001973.1 + 110815 0.71 0.511204
Target:  5'- aGGC-CGCGCCGGACGagcuCCGcgucgcguucaacgACCGGCc- -3'
miRNA:   3'- -CCGaGCGCGGCCUGU----GGU--------------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 121673 0.71 0.514055
Target:  5'- cGCUCGCGgcgcCCGGAUACCGguacGCgAGCUc -3'
miRNA:   3'- cCGAGCGC----GGCCUGUGGU----UGgUCGAc -5'
8059 5' -59.2 NC_001973.1 + 110366 0.71 0.523603
Target:  5'- cGGC-CGCGUCGGACGgCGGCaAGCg- -3'
miRNA:   3'- -CCGaGCGCGGCCUGUgGUUGgUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.