Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 69641 | 0.66 | 0.654747 |
Target: 5'- aGUCGgGCGCGcCCUCCGUUU--UGCUc -3' miRNA: 3'- -CGGCgCGCGCaGGGGGCGAAcuGCGA- -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 69928 | 0.71 | 0.37358 |
Target: 5'- cGCCGCgGCGCGUgagcaggCCCCUGCc--GCGCa -3' miRNA: 3'- -CGGCG-CGCGCA-------GGGGGCGaacUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 71725 | 0.67 | 0.586859 |
Target: 5'- cGCCGC-CGCGcCCCCgGCgcc-CGCg -3' miRNA: 3'- -CGGCGcGCGCaGGGGgCGaacuGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 74020 | 0.68 | 0.520377 |
Target: 5'- gGUCGCGgGCGUCgCaCUCGaugUGGCGCa -3' miRNA: 3'- -CGGCGCgCGCAG-G-GGGCga-ACUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 74529 | 0.68 | 0.511103 |
Target: 5'- aCCGCGUGCGagCCgCCCGCc--ACGCa -3' miRNA: 3'- cGGCGCGCGCa-GG-GGGCGaacUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 77367 | 0.67 | 0.586859 |
Target: 5'- cGCgGcCGCGCG-CCCgCGCgccGGCGCc -3' miRNA: 3'- -CGgC-GCGCGCaGGGgGCGaa-CUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 81120 | 0.66 | 0.645042 |
Target: 5'- --gGCGCGCuugCgCCCCGacgUGACGCUc -3' miRNA: 3'- cggCGCGCGca-G-GGGGCga-ACUGCGA- -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 86190 | 0.66 | 0.635329 |
Target: 5'- gGCCGagauGCagaGCGUUCCCCGauacGACGCg -3' miRNA: 3'- -CGGCg---CG---CGCAGGGGGCgaa-CUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 86959 | 0.66 | 0.645042 |
Target: 5'- aGCCGacgGCGcCGUCcgCCCCGCccgcGGCGCc -3' miRNA: 3'- -CGGCg--CGC-GCAG--GGGGCGaa--CUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 88561 | 0.73 | 0.270624 |
Target: 5'- cGUCgGCGCGCGcCCUCCGCacgcacUGGCGCg -3' miRNA: 3'- -CGG-CGCGCGCaGGGGGCGa-----ACUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 95710 | 0.68 | 0.548573 |
Target: 5'- cGCCGacgGCGCGgugCgCCgGCUguUGGCGCa -3' miRNA: 3'- -CGGCg--CGCGCa--GgGGgCGA--ACUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 98802 | 0.66 | 0.635329 |
Target: 5'- uGCCcgGCGCGaUGUCCa-CGCUcaUGACGCc -3' miRNA: 3'- -CGG--CGCGC-GCAGGggGCGA--ACUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 99347 | 0.68 | 0.529716 |
Target: 5'- -gCGCGCGCGUCgaCUUCGCccGGCGCc -3' miRNA: 3'- cgGCGCGCGCAG--GGGGCGaaCUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 105171 | 0.68 | 0.524105 |
Target: 5'- uCCGCGCGUGUCUCCCGauuaaauaggucGAuCGCg -3' miRNA: 3'- cGGCGCGCGCAGGGGGCgaa---------CU-GCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 105490 | 0.67 | 0.586859 |
Target: 5'- gGCCGgGCGCGUugCCgCCGUagUUGAgguCGCa -3' miRNA: 3'- -CGGCgCGCGCA--GGgGGCG--AACU---GCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 106804 | 0.69 | 0.457046 |
Target: 5'- cCCGCGCccGCG-CCCgCGCUUGcgcccGCGCUu -3' miRNA: 3'- cGGCGCG--CGCaGGGgGCGAAC-----UGCGA- -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 107254 | 0.66 | 0.635329 |
Target: 5'- aGCaCGCGCGCGgCgCgUCGCUUGAC-CUc -3' miRNA: 3'- -CG-GCGCGCGCaG-GgGGCGAACUGcGA- -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 107298 | 0.68 | 0.539117 |
Target: 5'- cGCCGCGCacGCGUUgggCCCGaugcUGGCGCg -3' miRNA: 3'- -CGGCGCG--CGCAGg--GGGCga--ACUGCGa -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 108445 | 0.66 | 0.625613 |
Target: 5'- cGCU-CGCGCGaCgCCCGCaccgUGugGCUg -3' miRNA: 3'- -CGGcGCGCGCaGgGGGCGa---ACugCGA- -5' |
|||||||
8060 | 3' | -62.6 | NC_001973.1 | + | 109509 | 0.69 | 0.474738 |
Target: 5'- cGCCGcCGC-CGUUCgCCGCUUGgcucuuGCGCUu -3' miRNA: 3'- -CGGC-GCGcGCAGGgGGCGAAC------UGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home