miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 3' -62.6 NC_001973.1 + 3771 0.67 0.606201
Target:  5'- aCCGCGCGCG-CgCCCCGUccacgGcCGCc -3'
miRNA:   3'- cGGCGCGCGCaG-GGGGCGaa---CuGCGa -5'
8060 3' -62.6 NC_001973.1 + 5709 0.72 0.309095
Target:  5'- uGCCuGaggaGCGCGUCgCCCCGCUggGugGUg -3'
miRNA:   3'- -CGG-Cg---CGCGCAG-GGGGCGAa-CugCGa -5'
8060 3' -62.6 NC_001973.1 + 7712 0.66 0.645042
Target:  5'- -aCGaGCGCG-CCgCCCGCccgacUGACGCUg -3'
miRNA:   3'- cgGCgCGCGCaGG-GGGCGa----ACUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 8834 0.73 0.295825
Target:  5'- cGCC-CGC-CGUCCCgCGCUgcUGGCGCg -3'
miRNA:   3'- -CGGcGCGcGCAGGGgGCGA--ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 23268 0.69 0.439713
Target:  5'- cGCCGCGCGCGcuUgCCCgGCggcGGCGgUa -3'
miRNA:   3'- -CGGCGCGCGC--AgGGGgCGaa-CUGCgA- -5'
8060 3' -62.6 NC_001973.1 + 24141 0.72 0.336983
Target:  5'- gGgUGCGCGCG-CCgCCCGCcucGGCGCUg -3'
miRNA:   3'- -CgGCGCGCGCaGG-GGGCGaa-CUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 25715 0.68 0.501898
Target:  5'- aGCCuuGCGCG-CCgCCCGCgccgccGGCGCg -3'
miRNA:   3'- -CGGcgCGCGCaGG-GGGCGaa----CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 31757 0.68 0.501898
Target:  5'- uGCCGCGCGCGcugCCCaCCaaCgaGAUGCa -3'
miRNA:   3'- -CGGCGCGCGCa--GGG-GGc-GaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 33135 0.68 0.529716
Target:  5'- cGCUGCGuCGCG-CCCUgcaggUGCUUGugGUc -3'
miRNA:   3'- -CGGCGC-GCGCaGGGG-----GCGAACugCGa -5'
8060 3' -62.6 NC_001973.1 + 34356 0.67 0.577229
Target:  5'- aGUCGgGCGCGUcgcCCUCCGCgUUGGC-CUu -3'
miRNA:   3'- -CGGCgCGCGCA---GGGGGCG-AACUGcGA- -5'
8060 3' -62.6 NC_001973.1 + 35407 0.75 0.200572
Target:  5'- cGCCGCGCGCaaGUCUUUCGCgcucGACGCg -3'
miRNA:   3'- -CGGCGCGCG--CAGGGGGCGaa--CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 38087 0.67 0.567635
Target:  5'- uGUCGCGgGCGUCUUUCGCgUUGAC-Ca -3'
miRNA:   3'- -CGGCGCgCGCAGGGGGCG-AACUGcGa -5'
8060 3' -62.6 NC_001973.1 + 45867 0.67 0.567635
Target:  5'- --gGCGCGCGcUCCUCgGCcgcGGCGCUg -3'
miRNA:   3'- cggCGCGCGC-AGGGGgCGaa-CUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 45970 0.69 0.448333
Target:  5'- gGCCgGCGCGC-UCgCCCUGCUgu-CGCUg -3'
miRNA:   3'- -CGG-CGCGCGcAG-GGGGCGAacuGCGA- -5'
8060 3' -62.6 NC_001973.1 + 46106 0.68 0.529716
Target:  5'- gGCCGCGUGC---CCgCGCUgGACGCg -3'
miRNA:   3'- -CGGCGCGCGcagGGgGCGAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 47799 0.66 0.645042
Target:  5'- gGCCGCGCcggccgacGCGUgcgccaaaucgcCCgCCCGCUcgcuagucuUGACGUa -3'
miRNA:   3'- -CGGCGCG--------CGCA------------GG-GGGCGA---------ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 52852 0.68 0.511103
Target:  5'- gGCCGCGCGCGgCCggucggUCCaGCU-GGCGCc -3'
miRNA:   3'- -CGGCGCGCGCaGG------GGG-CGAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 54509 0.68 0.500981
Target:  5'- aGCCGCuucagguugaacaGCGgGUCCUCCGCcucgaugGGCGUg -3'
miRNA:   3'- -CGGCG-------------CGCgCAGGGGGCGaa-----CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 56350 0.7 0.422762
Target:  5'- gGCCGCGCuCGggCCCCGaCUcGGCGCc -3'
miRNA:   3'- -CGGCGCGcGCagGGGGC-GAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 59877 0.66 0.625613
Target:  5'- -aCGCGCGCGgCCCCaacgGC--GGCGCg -3'
miRNA:   3'- cgGCGCGCGCaGGGGg---CGaaCUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.