miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 3' -62.6 NC_001973.1 + 35407 0.75 0.200572
Target:  5'- cGCCGCGCGCaaGUCUUUCGCgcucGACGCg -3'
miRNA:   3'- -CGGCGCGCG--CAGGGGGCGaa--CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 124480 0.74 0.225441
Target:  5'- aUCGCGCGCGUCaacgCCCGCgcucugccGGCGCUg -3'
miRNA:   3'- cGGCGCGCGCAGg---GGGCGaa------CUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 88561 0.73 0.270624
Target:  5'- cGUCgGCGCGCGcCCUCCGCacgcacUGGCGCg -3'
miRNA:   3'- -CGG-CGCGCGCaGGGGGCGa-----ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 158929 0.73 0.295825
Target:  5'- cGCCGCGCGCGaccgagCCgCCCGCguc-CGCg -3'
miRNA:   3'- -CGGCGCGCGCa-----GG-GGGCGaacuGCGa -5'
8060 3' -62.6 NC_001973.1 + 8834 0.73 0.295825
Target:  5'- cGCC-CGC-CGUCCCgCGCUgcUGGCGCg -3'
miRNA:   3'- -CGGcGCGcGCAGGGgGCGA--ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 5709 0.72 0.309095
Target:  5'- uGCCuGaggaGCGCGUCgCCCCGCUggGugGUg -3'
miRNA:   3'- -CGG-Cg---CGCGCAG-GGGGCGAa-CugCGa -5'
8060 3' -62.6 NC_001973.1 + 24141 0.72 0.336983
Target:  5'- gGgUGCGCGCG-CCgCCCGCcucGGCGCUg -3'
miRNA:   3'- -CgGCGCGCGCaGG-GGGCGaa-CUGCGA- -5'
8060 3' -62.6 NC_001973.1 + 69928 0.71 0.37358
Target:  5'- cGCCGCgGCGCGUgagcaggCCCCUGCc--GCGCa -3'
miRNA:   3'- -CGGCG-CGCGCA-------GGGGGCGaacUGCGa -5'
8060 3' -62.6 NC_001973.1 + 138993 0.7 0.398086
Target:  5'- cGCCGC-CGCGUCCgacUCCGCc-GGCGCc -3'
miRNA:   3'- -CGGCGcGCGCAGG---GGGCGaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 56350 0.7 0.422762
Target:  5'- gGCCGCGCuCGggCCCCGaCUcGGCGCc -3'
miRNA:   3'- -CGGCGCGcGCagGGGGC-GAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 121643 0.69 0.439713
Target:  5'- gGCCGaCGCGCGcCgCCUCGaagGGCGCg -3'
miRNA:   3'- -CGGC-GCGCGCaG-GGGGCgaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 23268 0.69 0.439713
Target:  5'- cGCCGCGCGCGcuUgCCCgGCggcGGCGgUa -3'
miRNA:   3'- -CGGCGCGCGC--AgGGGgCGaa-CUGCgA- -5'
8060 3' -62.6 NC_001973.1 + 45970 0.69 0.448333
Target:  5'- gGCCgGCGCGC-UCgCCCUGCUgu-CGCUg -3'
miRNA:   3'- -CGG-CGCGCGcAG-GGGGCGAacuGCGA- -5'
8060 3' -62.6 NC_001973.1 + 106804 0.69 0.457046
Target:  5'- cCCGCGCccGCG-CCCgCGCUUGcgcccGCGCUu -3'
miRNA:   3'- cGGCGCG--CGCaGGGgGCGAAC-----UGCGA- -5'
8060 3' -62.6 NC_001973.1 + 109509 0.69 0.474738
Target:  5'- cGCCGcCGC-CGUUCgCCGCUUGgcucuuGCGCUu -3'
miRNA:   3'- -CGGC-GCGcGCAGGgGGCGAAC------UGCGA- -5'
8060 3' -62.6 NC_001973.1 + 128540 0.69 0.474738
Target:  5'- gGUCGUuCGCGUUCCaCUGCUUGAacCGCUu -3'
miRNA:   3'- -CGGCGcGCGCAGGG-GGCGAACU--GCGA- -5'
8060 3' -62.6 NC_001973.1 + 137642 0.69 0.492767
Target:  5'- gGCCGUGCuccaaucuuUGUCCggucugaaCCGCUUGACGCg -3'
miRNA:   3'- -CGGCGCGc--------GCAGGg-------GGCGAACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 54509 0.68 0.500981
Target:  5'- aGCCGCuucagguugaacaGCGgGUCCUCCGCcucgaugGGCGUg -3'
miRNA:   3'- -CGGCG-------------CGCgCAGGGGGCGaa-----CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 31757 0.68 0.501898
Target:  5'- uGCCGCGCGCGcugCCCaCCaaCgaGAUGCa -3'
miRNA:   3'- -CGGCGCGCGCa--GGG-GGc-GaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 25715 0.68 0.501898
Target:  5'- aGCCuuGCGCG-CCgCCCGCgccgccGGCGCg -3'
miRNA:   3'- -CGGcgCGCGCaGG-GGGCGaa----CUGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.