miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 5' -53.6 NC_001973.1 + 10518 0.8 0.330369
Target:  5'- uUCAGCGCCaGGCAGUAG-GAGGAGCccgGCu -3'
miRNA:   3'- -AGUUGCGG-CUGUCGUCuCUUCUCG---CG- -5'
8060 5' -53.6 NC_001973.1 + 64622 0.8 0.353663
Target:  5'- gUCGGCGCCGAgcaaaAGaCGGAGAAG-GCGCa -3'
miRNA:   3'- -AGUUGCGGCUg----UC-GUCUCUUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 124955 0.79 0.386488
Target:  5'- -gAGCGCCGACgAGCuGGAcGAAGAGUGCc -3'
miRNA:   3'- agUUGCGGCUG-UCG-UCU-CUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 143161 0.78 0.403636
Target:  5'- aUCGACGCCgGGCGGCugcguGGAucGGAGAGUGCg -3'
miRNA:   3'- -AGUUGCGG-CUGUCG-----UCU--CUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 10804 0.78 0.40975
Target:  5'- -aGGCGCCGACGGCGgcgagaaucgccacGAGGAGcAGCGUg -3'
miRNA:   3'- agUUGCGGCUGUCGU--------------CUCUUC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 31052 0.77 0.461601
Target:  5'- -gAACGCCGACGGCGggcagcgugcggaucGAGAaguuggccagcgAGGGCGCg -3'
miRNA:   3'- agUUGCGGCUGUCGU---------------CUCU------------UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 42918 0.77 0.486375
Target:  5'- aCGACGCucgCGACugcaucguGGCGGAGGAGaAGCGCg -3'
miRNA:   3'- aGUUGCG---GCUG--------UCGUCUCUUC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 84157 0.77 0.486375
Target:  5'- cUCGAgGCCGA-GGCGGAGAGcGGCGCc -3'
miRNA:   3'- -AGUUgCGGCUgUCGUCUCUUcUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 81938 0.76 0.535671
Target:  5'- aUCGGCGuCCGGC-GCGGAGA--AGCGCu -3'
miRNA:   3'- -AGUUGC-GGCUGuCGUCUCUucUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 84331 0.75 0.57632
Target:  5'- gUCAGCuacgGCCGGCuGCAgGAGGAcaucGAGCGCg -3'
miRNA:   3'- -AGUUG----CGGCUGuCGU-CUCUU----CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 133102 0.75 0.57632
Target:  5'- --cGCGCUugGAC-GUGGAGAGGAGCGCg -3'
miRNA:   3'- aguUGCGG--CUGuCGUCUCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 42029 0.75 0.607257
Target:  5'- -gAGCGUCGACcuGGCcGAGguGAGCGCg -3'
miRNA:   3'- agUUGCGGCUG--UCGuCUCuuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 103904 0.74 0.617618
Target:  5'- gCGAgcCGCCG-CGGCGcGAcGAGGAGCGCg -3'
miRNA:   3'- aGUU--GCGGCuGUCGU-CU-CUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 86447 0.74 0.627989
Target:  5'- aCGACgGCCGcgGCGGCGGcGGAAGcGCGCg -3'
miRNA:   3'- aGUUG-CGGC--UGUCGUC-UCUUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 30395 0.73 0.669424
Target:  5'- cCGGCGCggCGGCGGCGGcGGAG-GCGCc -3'
miRNA:   3'- aGUUGCG--GCUGUCGUCuCUUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 85246 0.73 0.68999
Target:  5'- gUAGCgGUCGACuuUGGAGAGGGGCGCg -3'
miRNA:   3'- aGUUG-CGGCUGucGUCUCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 133505 0.73 0.700204
Target:  5'- gUCcACGCUcggcuugucgGGCAGCAGAGgcGAGgGCc -3'
miRNA:   3'- -AGuUGCGG----------CUGUCGUCUCuuCUCgCG- -5'
8060 5' -53.6 NC_001973.1 + 119231 0.73 0.709345
Target:  5'- gUCGACGCCGA--GCAGGcGAAGcgcaccaacgacaAGCGCa -3'
miRNA:   3'- -AGUUGCGGCUguCGUCU-CUUC-------------UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 144731 0.72 0.729456
Target:  5'- -gAGCGCCaGGCGGCGGcGGAGGcggccgaggaggcGGCGCg -3'
miRNA:   3'- agUUGCGG-CUGUCGUC-UCUUC-------------UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 109561 0.72 0.730453
Target:  5'- -gAACGCCGGC-GCGGGGcggguuucGGGCGCg -3'
miRNA:   3'- agUUGCGGCUGuCGUCUCuu------CUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.