miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 5' -53.6 NC_001973.1 + 4192 0.68 0.918565
Target:  5'- -aAACGCCG-CAGCuGGAGGugcauGCGCu -3'
miRNA:   3'- agUUGCGGCuGUCG-UCUCUucu--CGCG- -5'
8060 5' -53.6 NC_001973.1 + 6411 0.66 0.960546
Target:  5'- cCGAgUGCgCGGCGGCGGcgcgccGAcGAGCGCg -3'
miRNA:   3'- aGUU-GCG-GCUGUCGUCu-----CUuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 7764 0.71 0.778991
Target:  5'- gCGGCGgCGGCGGCGucGAGGAGCugGCu -3'
miRNA:   3'- aGUUGCgGCUGUCGUcuCUUCUCG--CG- -5'
8060 5' -53.6 NC_001973.1 + 7887 0.67 0.944299
Target:  5'- gCAACGCCGccggcgcguuGCAgGCGuucuguugcGAGGcGGAGCGCg -3'
miRNA:   3'- aGUUGCGGC----------UGU-CGU---------CUCU-UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 8164 0.67 0.93474
Target:  5'- aCGGCaCCGuCGGCGGgucgacGGAcGAGCGCg -3'
miRNA:   3'- aGUUGcGGCuGUCGUC------UCUuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 8667 0.68 0.924203
Target:  5'- uUCGGCGaaGACGGCuccacGGAGGAGAcCGUc -3'
miRNA:   3'- -AGUUGCggCUGUCG-----UCUCUUCUcGCG- -5'
8060 5' -53.6 NC_001973.1 + 9800 0.69 0.893584
Target:  5'- cCGGCGUgacggaggccaCGACGGCgucgucGGAGAAG-GCGCu -3'
miRNA:   3'- aGUUGCG-----------GCUGUCG------UCUCUUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 10518 0.8 0.330369
Target:  5'- uUCAGCGCCaGGCAGUAG-GAGGAGCccgGCu -3'
miRNA:   3'- -AGUUGCGG-CUGUCGUCuCUUCUCG---CG- -5'
8060 5' -53.6 NC_001973.1 + 10804 0.78 0.40975
Target:  5'- -aGGCGCCGACGGCGgcgagaaucgccacGAGGAGcAGCGUg -3'
miRNA:   3'- agUUGCGGCUGUCGU--------------CUCUUC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 14383 0.66 0.967294
Target:  5'- gCGAgGCCgGACAGUAGcccgcGAAcAGCGCu -3'
miRNA:   3'- aGUUgCGG-CUGUCGUCu----CUUcUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 16176 0.68 0.929594
Target:  5'- aCGGCGcCCGuguCGGCGcAGGccgcuAGAGCGCg -3'
miRNA:   3'- aGUUGC-GGCu--GUCGUcUCU-----UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 16923 0.71 0.778991
Target:  5'- cUCGGCGgCG-CAGCAaaaAGAAGGGCGUu -3'
miRNA:   3'- -AGUUGCgGCuGUCGUc--UCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 22423 0.66 0.955677
Target:  5'- aCGACGCCGccgcgcccgcgcccACGGCcuuGGAGcugguguucGAGCGCa -3'
miRNA:   3'- aGUUGCGGC--------------UGUCG---UCUCuu-------CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 22534 0.68 0.929594
Target:  5'- aCAauuGCGCgCGACAGguGAcGgcGGGCGa -3'
miRNA:   3'- aGU---UGCG-GCUGUCguCU-CuuCUCGCg -5'
8060 5' -53.6 NC_001973.1 + 23084 0.68 0.924203
Target:  5'- -uGGCGCUGcgcuCGGCc--GAAGAGCGCg -3'
miRNA:   3'- agUUGCGGCu---GUCGucuCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 23206 0.67 0.943844
Target:  5'- --cGCGCCGACGagcgcgcaguggcGCAGGGccuGGCGCu -3'
miRNA:   3'- aguUGCGGCUGU-------------CGUCUCuucUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 26027 0.66 0.973182
Target:  5'- -aGACGaaCCGGCaAGCGGGcGAGuAGCGCu -3'
miRNA:   3'- agUUGC--GGCUG-UCGUCUcUUC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 27856 0.7 0.849174
Target:  5'- cCGGCGCUGGCGGCcGcGGccgcGGGCGCg -3'
miRNA:   3'- aGUUGCGGCUGUCGuCuCUu---CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 28404 0.66 0.964031
Target:  5'- gCGACGCCGuCAGU------GAGCGCg -3'
miRNA:   3'- aGUUGCGGCuGUCGucucuuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 28973 0.71 0.787403
Target:  5'- -gGGCGgCGACgcguuguAGuCGGGGAAGGGCGCc -3'
miRNA:   3'- agUUGCgGCUG-------UC-GUCUCUUCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.