miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 5' -64.2 NC_001973.1 + 68007 0.66 0.57509
Target:  5'- gUCGAggUUGUCGAgacUGGCGCCCGCguCGCg -3'
miRNA:   3'- aGGCUg-AGCGGCU---GCCGCGGGCG--GCG- -5'
8061 5' -64.2 NC_001973.1 + 36986 0.66 0.572267
Target:  5'- -aCGGCUCGCCGcccaauuccagaggGCGGCgaGCUCGuuGa -3'
miRNA:   3'- agGCUGAGCGGC--------------UGCCG--CGGGCggCg -5'
8061 5' -64.2 NC_001973.1 + 38246 0.66 0.565694
Target:  5'- cCCG-CUC-CCaauCGGCGCUCGcCCGCc -3'
miRNA:   3'- aGGCuGAGcGGcu-GCCGCGGGC-GGCG- -5'
8061 5' -64.2 NC_001973.1 + 24096 0.66 0.565694
Target:  5'- -gCGACgagGUCGACGGCGaCgUGUCGCu -3'
miRNA:   3'- agGCUGag-CGGCUGCCGC-GgGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 157884 0.67 0.556338
Target:  5'- -gCGGCUCGUguCGGaggucGCGgCCGCCGCg -3'
miRNA:   3'- agGCUGAGCG--GCUgc---CGCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 94283 0.67 0.556338
Target:  5'- -aCGAggCGCCGAgGgaaggcggcGCGCCCGCCa- -3'
miRNA:   3'- agGCUgaGCGGCUgC---------CGCGGGCGGcg -5'
8061 5' -64.2 NC_001973.1 + 120819 0.67 0.556338
Target:  5'- -aCGAUcgCGCCGugcccGCGGaCGCggaCGCCGCg -3'
miRNA:   3'- agGCUGa-GCGGC-----UGCC-GCGg--GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 83354 0.67 0.547028
Target:  5'- cCCGACaCGcCCGAUcuGUGCCgGCUGCu -3'
miRNA:   3'- aGGCUGaGC-GGCUGc-CGCGGgCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 56192 0.67 0.547028
Target:  5'- cUCGACguagucgcuuUCGUCGGCgucGGCGCCgGgCGCg -3'
miRNA:   3'- aGGCUG----------AGCGGCUG---CCGCGGgCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 121691 0.67 0.547028
Target:  5'- aCCGguacgcgaGCUCGgCGGCGGCG-UCGUCGUc -3'
miRNA:   3'- aGGC--------UGAGCgGCUGCCGCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 58028 0.67 0.547028
Target:  5'- aCCG-CUCGaucucgggcuCCGGCGGCGgCgGCgGCu -3'
miRNA:   3'- aGGCuGAGC----------GGCUGCCGCgGgCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 132553 0.67 0.547028
Target:  5'- gCgGGCUCGagcgCGGCGGUgugGCgCGCCGUg -3'
miRNA:   3'- aGgCUGAGCg---GCUGCCG---CGgGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 41075 0.67 0.5461
Target:  5'- aUCGACcccgGCCGGCGcguaagauccuacGCGUCCGCCGa -3'
miRNA:   3'- aGGCUGag--CGGCUGC-------------CGCGGGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 57613 0.67 0.541466
Target:  5'- cUCCGGCUCGUCGgccaccaauucguacACGuccacGUGCCCgcuuucguacggGCCGCu -3'
miRNA:   3'- -AGGCUGAGCGGC---------------UGC-----CGCGGG------------CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 81813 0.67 0.537768
Target:  5'- gUCCGGCgcCGCCGGCGGCGa-CGagaCGa -3'
miRNA:   3'- -AGGCUGa-GCGGCUGCCGCggGCg--GCg -5'
8061 5' -64.2 NC_001973.1 + 141947 0.67 0.537768
Target:  5'- -gCaGCUCGCCGGCgGGCGaCCC-CCaGCg -3'
miRNA:   3'- agGcUGAGCGGCUG-CCGC-GGGcGG-CG- -5'
8061 5' -64.2 NC_001973.1 + 38143 0.67 0.537768
Target:  5'- -gCGGCUUG--GAUGGgGCCCGCCGa -3'
miRNA:   3'- agGCUGAGCggCUGCCgCGGGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 29973 0.67 0.535
Target:  5'- gCCGGCUCgGUgGugGGCgcguauaucugcgaGCCCGacgaCGCg -3'
miRNA:   3'- aGGCUGAG-CGgCugCCG--------------CGGGCg---GCG- -5'
8061 5' -64.2 NC_001973.1 + 45855 0.67 0.528562
Target:  5'- cUgGGCgUCGCgGGCGcGCGCUCcucgGCCGCg -3'
miRNA:   3'- aGgCUG-AGCGgCUGC-CGCGGG----CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 28409 0.67 0.528562
Target:  5'- gCCGucagugagcgcGCUUGgCGGCcGCGgCCGCCGCc -3'
miRNA:   3'- aGGC-----------UGAGCgGCUGcCGCgGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.