miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 5' -64.2 NC_001973.1 + 71777 0.83 0.054921
Target:  5'- gCCGAgCUCgagGCCGGCGGCGCCCccgucGCCGCu -3'
miRNA:   3'- aGGCU-GAG---CGGCUGCCGCGGG-----CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 73628 0.8 0.086082
Target:  5'- -aCGGCUCGCCGucCGcGCGCUCGUCGCa -3'
miRNA:   3'- agGCUGAGCGGCu-GC-CGCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 6425 0.8 0.086082
Target:  5'- -gCGGCgCGCCGACGagcGCGCCCGUCGCc -3'
miRNA:   3'- agGCUGaGCGGCUGC---CGCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 38582 0.79 0.092702
Target:  5'- -aCGAUUCGCCGcCGGCGCaCCGCCa- -3'
miRNA:   3'- agGCUGAGCGGCuGCCGCG-GGCGGcg -5'
8061 5' -64.2 NC_001973.1 + 158385 0.79 0.10228
Target:  5'- gCCGACUCGuCCGAUcGCGCCCG-CGCc -3'
miRNA:   3'- aGGCUGAGC-GGCUGcCGCGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 83079 0.79 0.10228
Target:  5'- cUCCGGCgagCGgCGGCGGCGCC-GUCGCg -3'
miRNA:   3'- -AGGCUGa--GCgGCUGCCGCGGgCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 140438 0.78 0.112786
Target:  5'- uUUCGACUCGCCGGCGaggaGCGCuucuCCGCCGa -3'
miRNA:   3'- -AGGCUGAGCGGCUGC----CGCG----GGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 74351 0.76 0.150633
Target:  5'- gCCGGCggCGCa-GCGGCGCaCCGCCGUc -3'
miRNA:   3'- aGGCUGa-GCGgcUGCCGCG-GGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 98245 0.76 0.150633
Target:  5'- aUUCGuCUCGCUGcGCGGCGCUgGUCGCg -3'
miRNA:   3'- -AGGCuGAGCGGC-UGCCGCGGgCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 71714 0.76 0.161758
Target:  5'- aCCGGCgccgcCGCCGccgcgccccCGGCGCCCGCgGCc -3'
miRNA:   3'- aGGCUGa----GCGGCu--------GCCGCGGGCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 53845 0.76 0.161758
Target:  5'- aCCGAgCUCGCCccGGCGGCGgCggCGCCGCc -3'
miRNA:   3'- aGGCU-GAGCGG--CUGCCGCgG--GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 123497 0.76 0.161758
Target:  5'- gCCGGCUCGUCGcacaccACGGCGCgCuCGCCGg -3'
miRNA:   3'- aGGCUGAGCGGC------UGCCGCG-G-GCGGCg -5'
8061 5' -64.2 NC_001973.1 + 119424 0.76 0.168386
Target:  5'- uUCgCGACaUGCuCGACGGCcacucgaucgccgcGCCCGCCGCc -3'
miRNA:   3'- -AG-GCUGaGCG-GCUGCCG--------------CGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 111055 0.75 0.17321
Target:  5'- aUUCGGCgUCGCUGcucaacGCGGCGCCCgacguggGCCGCg -3'
miRNA:   3'- -AGGCUG-AGCGGC------UGCCGCGGG-------CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 119299 0.75 0.178157
Target:  5'- gUUGAC-CGUCGcguucaagagcggguCGGCGCCCGCCGCg -3'
miRNA:   3'- aGGCUGaGCGGCu--------------GCCGCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 83520 0.75 0.179414
Target:  5'- gCCGGCUCGCCGAcgagcuggaaaCGGCGCgCGacaaauugacacagaCCGCg -3'
miRNA:   3'- aGGCUGAGCGGCU-----------GCCGCGgGC---------------GGCG- -5'
8061 5' -64.2 NC_001973.1 + 3833 0.75 0.181949
Target:  5'- aCCGGCUCGCCGGCGauuuGgGCCgGCuCGUc -3'
miRNA:   3'- aGGCUGAGCGGCUGC----CgCGGgCG-GCG- -5'
8061 5' -64.2 NC_001973.1 + 95693 0.75 0.186247
Target:  5'- cCCGACgagcccuacacCGCCGACGGCGCggugCGCCGg -3'
miRNA:   3'- aGGCUGa----------GCGGCUGCCGCGg---GCGGCg -5'
8061 5' -64.2 NC_001973.1 + 26173 0.75 0.186247
Target:  5'- gCCGGCgcgggcgCGUCGACGGCGCuCCaGuuGCg -3'
miRNA:   3'- aGGCUGa------GCGGCUGCCGCG-GG-CggCG- -5'
8061 5' -64.2 NC_001973.1 + 23720 0.75 0.190633
Target:  5'- gCCGcuggGCUCGCUGACGG-GCCCGaCgGCg -3'
miRNA:   3'- aGGC----UGAGCGGCUGCCgCGGGC-GgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.