miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 5' -64.2 NC_001973.1 + 1212 0.68 0.483496
Target:  5'- uUCgGAgUCGCCGcCGcCG-CCGCCGCc -3'
miRNA:   3'- -AGgCUgAGCGGCuGCcGCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 2092 0.66 0.57509
Target:  5'- uUCCGcaaUCGCCGGCGcGUacuuGCCCG-UGCa -3'
miRNA:   3'- -AGGCug-AGCGGCUGC-CG----CGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 3505 0.68 0.465989
Target:  5'- cUUGGCcaCGUCGACGacgaaGCCCGCCGCc -3'
miRNA:   3'- aGGCUGa-GCGGCUGCcg---CGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 3562 0.68 0.457359
Target:  5'- gCCGGCggggCGCgcgaugacCGACGGCGCgCGCUucgGCu -3'
miRNA:   3'- aGGCUGa---GCG--------GCUGCCGCGgGCGG---CG- -5'
8061 5' -64.2 NC_001973.1 + 3833 0.75 0.181949
Target:  5'- aCCGGCUCGCCGGCGauuuGgGCCgGCuCGUc -3'
miRNA:   3'- aGGCUGAGCGGCUGC----CgCGGgCG-GCG- -5'
8061 5' -64.2 NC_001973.1 + 4592 0.68 0.483496
Target:  5'- uUCCGGCccCGCUGcCcGCGUCCGCCuuGCa -3'
miRNA:   3'- -AGGCUGa-GCGGCuGcCGCGGGCGG--CG- -5'
8061 5' -64.2 NC_001973.1 + 4631 0.66 0.603467
Target:  5'- gUCUGGCguacacccUGUCGGCGGCGggCGCCGUc -3'
miRNA:   3'- -AGGCUGa-------GCGGCUGCCGCggGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 4915 0.66 0.57509
Target:  5'- aUCgUGACggaaaCGUCGGCGG-GCUCGUCGCc -3'
miRNA:   3'- -AG-GCUGa----GCGGCUGCCgCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 5747 0.66 0.57509
Target:  5'- aCgGGC-CGCCGAagcggcccaCGGCGCUacgcgcguCGCCGUg -3'
miRNA:   3'- aGgCUGaGCGGCU---------GCCGCGG--------GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 6113 0.69 0.399499
Target:  5'- -aUGACggCGCgCGAgGGCGCCgcgauaCGCCGCc -3'
miRNA:   3'- agGCUGa-GCG-GCUgCCGCGG------GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 6207 0.73 0.262055
Target:  5'- aCCGGCggcgcggUGCCGgcGCGGCGCCCuGUCGg -3'
miRNA:   3'- aGGCUGa------GCGGC--UGCCGCGGG-CGGCg -5'
8061 5' -64.2 NC_001973.1 + 6425 0.8 0.086082
Target:  5'- -gCGGCgCGCCGACGagcGCGCCCGUCGCc -3'
miRNA:   3'- agGCUGaGCGGCUGC---CGCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 6504 0.66 0.593982
Target:  5'- aCCGGCUgGgCGGCGcGgGCgUGCCGa -3'
miRNA:   3'- aGGCUGAgCgGCUGC-CgCGgGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 6962 0.67 0.510331
Target:  5'- cUCCGgcuGCUCGcCCGAacaGG-G-CCGCCGCg -3'
miRNA:   3'- -AGGC---UGAGC-GGCUg--CCgCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 7266 0.69 0.448815
Target:  5'- gCgGGCUCGgCGcGCGGCGCgC-CCGCu -3'
miRNA:   3'- aGgCUGAGCgGC-UGCCGCGgGcGGCG- -5'
8061 5' -64.2 NC_001973.1 + 7625 0.69 0.407476
Target:  5'- cCCGAgcaGCUG-CGcGCGCUCGCCGCc -3'
miRNA:   3'- aGGCUgagCGGCuGC-CGCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 7728 0.7 0.353785
Target:  5'- cCCGACUgaCGCUGgagcaccgguGCGGCGCgaaCCGCgGCg -3'
miRNA:   3'- aGGCUGA--GCGGC----------UGCCGCG---GGCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 8184 0.73 0.239664
Target:  5'- aCgGACgagcgCGCCGACGGCaccGCUuggCGCCGCu -3'
miRNA:   3'- aGgCUGa----GCGGCUGCCG---CGG---GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 8459 0.71 0.332354
Target:  5'- aCCG-CUCGCCGAccaCGGCaaccccacGUCCGUCGUg -3'
miRNA:   3'- aGGCuGAGCGGCU---GCCG--------CGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 8593 0.71 0.346534
Target:  5'- gCCGcGCgagaaaGCCGGCGGC-CgCGCCGCg -3'
miRNA:   3'- aGGC-UGag----CGGCUGCCGcGgGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.